Vibrio cholerae O1 El Tor N16961: VC_2506
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Entry
VC_2506 CDS
T00034
Name
(GenBank) RNA polymerase-associated protein HepA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
vch
Vibrio cholerae O1 El Tor N16961
Brite
KEGG Orthology (KO) [BR:
vch00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vch03021
]
VC_2506
Transcription machinery [BR:
vch03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
VC_2506
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RapA_C
Tudor_1_RapA
Tudor_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
Cas3-like_C_2
AAA_34
NAT10_TcmA_helicase
AAA_22
WWE
Motif
Other DBs
NCBI-ProteinID:
AAF95648
UniProt:
Q9KP70
LinkDB
All DBs
Position
I:complement(2693488..2696397)
Genome browser
AA seq
969 aa
AA seq
DB search
MSFALGQRWISDTESDLGLGTVVALDARTVTLMFAASEENRVYARSDAPVTRVIFNVGDV
VDSQQGWSLQVEQVVEDQGVYTYLGTRVDTEESGVALREIFLSNQIRFNKPQDKLFAGQI
DRMDNFVLRYRALTNQYQQHKSPMRGLCGMRAGLIPHQLYIAHEVGRRHAPRVLLADEVG
LGKTIEAGMIIHQQVLTGRAERILIVVPETLQHQWLVEMMRRFNLHFSIFDEERCVEAFS
EADNPFETQQYVLCSLDFLRKSRQRFEQALEAEWDLLVVDEAHHLEWHPEKPSREYQVIE
ALAEQTPGVLLLTATPEQLGRESHFARLRLLDADRFYDYEAFVKEEEQYAPVADAVTALF
SGEKLSDEAKNKITELLSEQDVEPLFKALESHASEDEIALARQELIDNLMDRHGTGRVLF
RNTRAAIKGFPVRNVHLLPLEIPSQYTTSMRVAGMLGGKLTPEARAMKMLYPEEIFQEFE
GEESSWWQFDSRVNWLLEKVKAKRSEKILVIASRASTALQLEQALREREGIRATVFHEGM
SIIERDKAAAYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRLD
RIGQKRDIDVYVPYLTETSQAILARWFQEGLNAFAETCPTGRAVYDAFAERLIPILAAGG
GEELEVIIEESAKLNKTLKSQLEVGRDRLLEMHSNGGEKAQQIAEQIAKTDGDTNLVTFA
LSLFDAIGLHQEDRGENALVVTPAEHMMVPSYPGLPYEGATITFDRDTALSREDMHFISW
EHPMVQGGIDLLMSEGVGTCAVSLLKNKALPVGTILLELVYVVDAQAPKRSGISRFLPVS
PIRILMDARGNDLSSQVEFESFNRQLSPVNRHLASKLVSSVQHDVHRLITASETAVEPRV
SAIREQAQRDMQQSLNSELERLLALKAVNPNIRDEEIEVLDQQIKELTGYIAQAQYQLDS
LRLIVVAHN
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgctttagggcaacgctggataagcgatacggaaagtgatctcgggttaggt
actgtggtggcgcttgatgcgcgtacagtgaccttgatgtttgcagcatcggaagaaaat
cgtgtgtatgcacgttcagatgcgccggtcacccgtgtgatcttcaatgtcggcgatgtg
gtggatagtcagcaaggctggtcgttacaagttgaacaagtggtggaagaccaaggcgtc
tacacctatctaggtacgcgagtggataccgaagaaagcggtgtcgcgctgcgtgaaatt
ttcctcagtaaccaaattcgttttaataaaccgcaggataagttgtttgccggtcaaatc
gatcgcatggacaactttgtgctgcgttatcgcgctcttaccaatcaatatcaacagcac
aaaagcccaatgcgtggcttgtgtggtatgcgcgctgggctgatcccgcatcagctgtac
atcgcccatgaagtcggtcgccgccatgcgccacgcgtattgttagccgatgaagtcggt
ttgggtaaaaccatcgaagcgggcatgatcatccatcagcaagtgctgaccgggcgtgcc
gagcgcatcctaattgtggtacctgaaacgctgcaacaccaatggttggtggagatgatg
cgccgtttcaacctgcacttttcgatttttgatgaagagcgctgtgtggaagcctttagc
gaggccgataacccatttgaaactcagcagtatgtgctgtgttcactcgatttcttgcgt
aaaagccgccagcgttttgaacaagcgttggaagcggaatgggatttgttggtcgtcgat
gaagctcaccatcttgagtggcacccagagaagccaagccgcgaatatcaagtgattgaa
gctttggccgaacagactcctggcgtattgctattgacggcaacgcctgagcagttaggt
cgtgaaagccactttgctcgtctgcgcttgctggatgcagatcgtttctacgattacgaa
gcttttgttaaagaagaagagcagtacgcaccggttgcggatgcggttactgcgctgttc
agcggtgagaagctgagtgatgaagcgaaaaataaaatcactgagcttctgtctgagcag
gatgtcgagccgctatttaaagcgttggaaagccacgccagcgaggacgaaattgctttg
gctcgccaagagctgattgacaatctgatggatcgccacggtactggtcgcgtgctgttc
cgtaacacgcgtgccgctatcaaaggcttccctgtgcgtaatgtgcatttgctgccattg
gagattccttctcaatacaccacgtcaatgcgtgttgcgggcatgctcggcggtaaactg
acgccagaagcgcgcgcgatgaaaatgctctacccagaagagattttccaagagtttgaa
ggcgaggagtcaagctggtggcaatttgactcacgcgtcaactggctgctcgaaaaagtc
aaagccaaacgcagcgagaagatcctcgtcatcgcttcacgtgccagtaccgcattgcag
ctagagcaggcactgcgtgagcgtgaaggcattcgtgcaacggtattccatgaaggcatg
tcgatcattgaacgcgataaagccgcggcttattttgcccaagaagagggcggcgcgcag
gtgctgatctgtagtgaaattggctcggaaggtcgtaatttccagtttgctaaccagttg
gtgatgttcgatctgccgttcaacccagacttgctagagcagcgtatcggacgtttggac
cgtatcggccaaaaacgtgatatcgatgtgtacgtgccatatctgaccgaaacgtcacaa
gcgattttggcgcgttggtttcaagaaggtttgaatgcctttgcggaaacctgcccaacc
ggtcgtgcggtgtatgatgccttcgctgagcgtttgatccccattctggccgccggtggc
ggtgaagagttggaagtgatcatcgaagagtcagccaagctcaacaaaacactgaaatca
cagctggaagtggggcgtgatcgcttgctggaaatgcattctaacggtggcgaaaaagcg
cagcagattgctgagcagatcgcgaaaaccgatggcgataccaatctggtgacgtttgct
ttgagcctgtttgatgcgattggtctgcatcaggaagatcgtggcgagaatgcgttggtg
gtcactcctgctgaacacatgatggtgccaagctatccgggcctcccttatgaaggcgcc
accattacttttgatcgtgacaccgcactgtcgcgtgaagatatgcacttcatcagttgg
gaacaccccatggtgcaaggtggcattgatttgctgatgagtgaaggggtgggcacttgc
gcggtgtcgctgttgaaaaacaaagcactgccagtgggtaccatcttgctggagctggtg
tatgtggtggatgcccaagcgccgaaacgcagtggcatcagccgcttcttgccagtctcg
ccaatccgaattctgatggatgcgcgcggtaatgatctctcttcgcaagtggagtttgaa
agctttaaccgtcagcttagccctgtgaatcgtcatttggccagcaagttggtgagctca
gtacagcatgacgtgcatcgtttgattacggcaagcgaaactgcggttgaaccacgagtg
agcgcgattcgtgaacaagcgcagcgtgatatgcagcagagccttaacagcgagttggag
cgtttgctggcactcaaagcggttaacccgaacattcgtgatgaagagatcgaagtgctg
gatcagcaaatcaaagagctgactggctatattgcgcaggcgcagtatcagctggattca
ctgcgtttgattgtggtggcacacaactga
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