Vibrio cholerae O1 El Tor N16961: VC_A0521
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Entry
VC_A0521 CDS
T00034
Name
(GenBank) exonuclease SbcC, putative
KO
K03546
DNA repair protein SbcC/Rad50
Organism
vch
Vibrio cholerae O1 El Tor N16961
Brite
KEGG Orthology (KO) [BR:
vch00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vch03400
]
VC_A0521
DNA repair and recombination proteins [BR:
vch03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
VC_A0521
Archaeal homologous recombinant proteins
VC_A0521
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_29
AAA_21
CwfJ_C_1
Motif
Other DBs
NCBI-ProteinID:
AAF96424
UniProt:
Q9KM67
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All DBs
Position
II:451596..454637
Genome browser
AA seq
1013 aa
AA seq
DB search
MRPLKLILQAFGPFAGREEIDFTKLGDAPLFLINGATGAGKSSILDAICYALYGETTGSE
RTGDQMRCDYAAPESLTEVIFEFELAGARYQITRQPDQEIPKKRGEGMTKKSHSATLVAL
KSDGNELIANKPNPVAKAVVELMGLDVKQFRQVMVLPQGKFRELLTANSKEREQIFGQLF
QTQLYSQIERALFERAAGIRKEKEEFDQQIKGTLSVVGLESEEQLQTELTELAPVLTHAQ
SQLKAEQQQWDETKAHYQAALELEQQFIRKQQLVVEIATHQEQATHIEMLRQQRQQAQKA
ARLTAVHQQWHQAQKNLQQAKLKVEQQQTLLQQAKAQQQQAQQASQQASLACEEVPKLNE
QRITWQRAEQKLLAQENVQQAVAKAERELQLATQNALNLQQASEKLEQELQNQRLEWEQQ
QRQLTRLEVQKARMNQLVQQVQAREREQSLLNELQTAQQALLRFEQQHHHIQTQAEQAKL
TADKLEFAWHTQRAAELALALTQNEPCPVCGSLEHPNKAQYSGDVVTKVQVEQARQQQQD
WVQRQQEAFHAWQQQGFKTEQIAQNLTTLSSELTLQQVALLNELIEQQQILHSDIAALQQ
LNPDLLKRQIEEGEQRLAHTKMTLEKQNQNQQQAWQTLAQLQAELASLRQEIPPELSDLD
TLRSAIGRVQNQIEILQKAEHTAREQWVQAQKQFASVQAAYQAAIEAHRESQRQQEETTS
AWQQGLLHSGFSDESAYLAARLTDEAIVNIERQIAQYEERSAMLSGEQQALSRKLAEKNR
PELEPLLVKVTQAEEKMALALQAFTQHQSRMDGLQRVAKQLADLYQKNRALEAEYQVVGT
LSDIANGKTGAKVSLHRFVLGVLLDDVLLQASQRLMKMSRGRYLLKRKEERAKGNVGSGL
DLMVEDSYSGKWRDVATLSGGESFMAALSLALGLSDVVQAYSGGIRLDTLFIDEGFGSLD
PESLDLAIQTLIDLQQGGRTIGIISHVTELKEQIGLRLDVLATRMGSTLRLIT
NT seq
3042 nt
NT seq
+upstream
nt +downstream
nt
atgcgtccgttaaaacttatcctccaagctttcggcccttttgccggacgagaagagatt
gactttacgaagttgggtgatgctccactgtttttgatcaatggggcaaccggtgcagga
aaaagctcgattctggatgcgatttgctacgccttgtatggcgaaaccacaggcagtgag
cgcaccggcgaccaaatgcgctgcgattatgcggcccctgagtctctcaccgaagtgatt
tttgagtttgagctggcgggggcgcgttaccaaatcacccgtcagcccgatcaagagatc
ccgaaaaaacggggtgaagggatgacgaagaaatcccattccgctactttggttgcactg
aaatcggatggaaacgagctgattgccaacaagcccaatcctgtcgcgaaggcggtggtc
gaattgatgggacttgatgttaagcaatttcgccaagtcatggtgttgcctcaaggcaag
tttcgtgagcttttaaccgccaattcaaaagagcgtgagcagatttttggtcagctcttt
caaacccagctctacagccaaattgaacgggcgctgtttgaacgagcagcgggtattcgt
aaagagaaagaagagtttgatcagcagatcaaaggtacgttgagtgtcgtcggactggaa
agtgaagagcagttacaaaccgagttgaccgaactggctccagtattaacccatgcgcaa
tcacaactcaaagctgagcaacagcagtgggatgaaacaaaagcgcactatcaagctgcg
cttgagttagaacaacaatttatccgcaagcagcaattggtggtagaaatcgcgactcac
caagagcaggctacacacatcgaaatgctgcgtcagcaacgccagcaagcccaaaaagca
gcgcgtttaaccgccgtccatcaacagtggcaccaagctcaaaaaaacctacagcaagcc
aaacttaaggttgagcagcagcagactctgttgcaacaggcgaaagctcagcagcaacag
gctcaacaggccagtcagcaagccagtttagcctgtgaagaagtacccaaattaaacgag
caacgcataacgtggcagcgtgctgagcaaaaattgctggcacaagaaaatgttcagcaa
gcggtggccaaggctgagcgtgaactgcaactggcgacacaaaatgcgcttaatttgcag
caagcgagcgaaaagctagagcaagagctacaaaaccaacgactcgaatgggaacagcaa
cagcgccaattgacgcgcttagaagttcaaaaagcgcgaatgaatcagttggtgcagcaa
gttcaggctcgcgagcgagaacaatcgttactgaatgaattacaaactgctcaacaagct
ttattgcgctttgagcagcaacatcaccacatccaaactcaggccgaacaagcgaaactg
accgcggataaactggagttcgcatggcatacccagagggctgcggagcttgctctcgca
ctcacacaaaatgaaccttgtccggtgtgcggcagtttagagcatcccaataaagcgcaa
tattcgggtgacgttgtcaccaaggttcaggttgaacaagccagacagcagcaacaagat
tgggtgcagcgtcagcaagaggcattccatgcttggcaacaacaagggtttaaaaccgag
cagatagcgcaaaatctcacgactttatcgagtgagctaactttgcagcaagtggcttta
ttgaatgagctcattgaacagcaacagatacttcacagtgatattgctgcgctacaacag
cttaaccctgatttgctgaaacggcagattgaagagggggagcagcggttagcgcacacc
aaaatgacgctcgaaaaacagaatcaaaaccagcaacaagcttggcagactttggctcag
ttacaggcggaattggcgagtttgcgccaagaaatcccaccggagctgtccgatcttgat
actttacgaagcgcgattgggcgtgtgcagaaccaaatagaaatcttacaaaaagcggag
catacggctcgtgaacagtgggtgcaggcgcaaaagcagtttgccagtgtgcaggcggct
tatcaggcggcgattgaagcgcaccgtgagtctcagcgtcagcaggaggaaaccacaagc
gcatggcagcaagggttactccattctggatttagcgatgagtccgcctatcttgccgct
cgtttaaccgatgaggctatcgtcaatatcgagcgccaaatcgcccagtatgaagagcgc
agtgcgatgctcagtggcgaacagcaagccttatcacgtaaattagcagagaaaaatcgc
ccagagttggaaccacttcttgtcaaagtaactcaagctgaagaaaaaatggcactggcg
ttgcaggcgtttacgcaacatcaatcgcggatggatggtttgcaacgtgtcgccaagcaa
ctggcggatctgtaccagaaaaatcgtgcattagaagccgaatatcaggtcgtgggcacc
ttaagtgatattgcgaatggcaaaacgggcgctaaagtcagcttacatcgctttgtgctt
ggtgttttgctggatgatgtcttgttacaagcttctcaacgactgatgaaaatgagccga
ggccgctatttactcaaacgtaaagaggaacgcgctaaaggtaatgtgggctcagggctg
gatttgatggtcgaagatagctacagcggtaaatggcgtgatgtggcaaccttgtccggt
ggtgaatcgttcatggccgccttatcgcttgcgcttggtttatccgatgtggttcaggct
tacagtggtggtatccgtcttgatactctgtttattgatgaaggttttggcagtttggat
ccggaatctttagatttagcgatccaaaccctaatcgatcttcagcaaggtggtcgaacg
atagggatcatctctcatgttaccgagctgaaagagcagatcggtctaagattggatgtg
ttggcgacaagaatgggtagcacgctgcgtttaatcacataa
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