KEGG   Vibrio cholerae O1 El Tor N16961: VC_A0768
Entry
VC_A0768          CDS       T00034                                 
Name
(GenBank) ATP-dependent RNA helicase, DEAD box family
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
vch  Vibrio cholerae O1 El Tor N16961
Pathway
vch03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vch00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    VC_A0768
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vch03019]
    VC_A0768
Enzymes [BR:vch01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     VC_A0768
Messenger RNA biogenesis [BR:vch03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     VC_A0768
SSDB
Motif
Pfam: DEAD Helicase_C ResIII P-loop_SecA AAA_22 Helicase_C_2
Other DBs
NCBI-ProteinID: AAF96666
UniProt: Q9KLH6
LinkDB
Position
II:complement(711450..712718)
AA seq 422 aa
MSELSITFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAF
GLPLIQRFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTS
MKVQLNHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVL
RRLSPLRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRE
LLSYLIGSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAG
KVRALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQ
PQLEAIERLLNTRLPQEWLKGFEPSPVVHEENSPRRSAGRSSEKRKLKAQLKIHAQRGKK
AR
NT seq 1269 nt   +upstreamnt  +downstreamnt
atgtcagaactctccatcactttttcgcaattaggcttggattctcgtctgctgaataca
ttgagcgagcttgggatcgccaatcccacgccaatccaacagcaagctattcctcatgta
ttgcaaggaaaagatgtactggcaggggcgcaaaccggaaccggtaaaacggcggcattt
ggcttacctttgatccaacgctttattgagcagccttggcagcgtgaagcaaacagcaaa
gagatccgggcgttagtgctggtgccaacgcgtgagttagctcagcaagtattggatagc
ctacaagcctacgcgaaaggaacggagcttaagatcgtagccgtttatggcggcacgagc
atgaaggtacagctcaatcatttgcgtggtggtgtggatattttgattgcgacgccgggg
cgtttgctcgatcacgcccatgtgaaatcgctgtttttgggcaaagttgaagtgttggta
ctcgatgaagcggatcgcatgctggatatgggctttatgccagatttgcagcgcgtgctg
cgccgtttatcgccactgcgtcaaacgctgtttttctctgcaacgtttgatagcaaaatc
aaagcggtggcgtatcgcatcatgcgtgatcctatcgaagtgcaggtgacgccatccaat
tccacggcagaaaccgtgcagcagatggtgtatccggtggataaaaagcgcaaacgcgaa
ctgctctcttatctgattggctcgaaaaattggcagcaagtgttggtgtttaccaaaacc
cgtcaaggcagtgatgcacttgcggaagaactcaagttggatggtataaaagcggtgtcg
attaatggcgataaaagccaaggtgcacgccaaaaggctttggatgattttaaagcaggc
aaagtgcgtgctttgattgcgaccgatgtcgccgcacgtgggttagatattgcccagctt
gagcaagtggtgaactacgatatgccatttaaagcggaagactatgtgcatcgtattggg
cgtacgggacgcgcaggtttagcgggattggcggtctctttgctgtcgcatgatgaacag
ccacaactcgaagcgattgagcgtttactcaatacacgtcttcctcaagaatggttgaaa
ggttttgagcctagccctgtggtgcatgaggaaaattcaccgcgtcgctcggctggccgt
tcgtcagaaaaacgcaaactaaaagcacaactgaaaatccatgcgcagcgcggtaaaaaa
gcgcgttaa

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