Vidua chalybeata (village indigobird): 128783752
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Entry
128783752 CDS
T11587
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
vcha Vidua chalybeata (village indigobird)
Pathway
vcha03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vcha00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
128783752 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vcha03021
]
128783752 (PCF11)
03019 Messenger RNA biogenesis [BR:
vcha03019
]
128783752 (PCF11)
Transcription machinery [BR:
vcha03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
128783752 (PCF11)
Messenger RNA biogenesis [BR:
vcha03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
128783752 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
DUF6980
Motif
Other DBs
NCBI-GeneID:
128783752
NCBI-ProteinID:
XP_053790756
LinkDB
All DBs
Position
2:complement(79331237..79352247)
Genome browser
AA seq
1699 aa
AA seq
DB search
MSAPESSAGSSEAREDACRDYQSSLEDLTFNSKPHINMLTILAEENVPFAKDIVSLIEAQ
IAKAPASEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRST
WDDIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESNAPTSAVT
SGASTPPAVPEIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSVQQ
GSSSIASVPAPSKQHMSPTPHMTVKPPHQTAVQSEKNKPSPSPPLHDIKIVNRDPRLNRM
GQHSSHTKDQSHRKEFSPSVTSQSETKGNKTAQAEKQNSTKPEKSKASEKTQKKELEQSK
AKSKSPSPLKNKLPDTKDSKSQECESTKVSDISKRDPRLKRHLQDKSEGKEEDVKEKRRS
TEKKEKEEHKTCEHRPVGSRNKVINGAVQKQDVITEESEKQGGKQGRSSSRKRSRSRSPK
ARSPSTHSPKRRERRSPKRRLRSLSPTSSTPKIGKIRQIGPKQSHVEEGTQAARDERNSN
KRNVKQEVRDPRRLKKAQEERPQETATQHSAKASPDPKENAENWQGSKSGKRWKSGWEES
KNSQQNDEHQAVVKSPHQRHRENWPAGKGILSPRAPKQQHRLSVDANLQIPKELTSASKR
ELLKKANDRLTSGEITQDEFLMVAHQIRQLFQYQEGKHRCNVWDSPTEEKCSLKKKPLLS
DAELTYYEHKAKLKRTQVQHSLSRLDLLDPDDILDYHIPDALLSGIECEQAKAKRGVQFD
RKEPFAERSRRHSPVSGTTRPFAENLSPLENRRRLEDQRATKGARGSDPYDSWGESDEFR
DALRQQGKSTAEFQKTDGDALCRFDNREERQLLGQAGGREEPRSPFTERFKRARYEDPEK
APFPESPGSRFGGIEAKQRISALMEDRPLFDGSPRPTAARVGVDGQGSPFVDGPAGSSSR
IDGPAGQAALRFEGPLVGAGASQFDGPLAGAGGAGALRFDGPPGQLAGSLRFEGPPGQVG
GGGPLRFEGPLGPLRFEGPAGQPVGGARFEGPGVGLRFEGPHGQPSGGLRFEGPHGQPMG
PRGQPGGGLRFEGPHGQPLGPHGQPGGSLRFEGPHLQPLGPHGQLGGGLRFEGPHGQPMG
PHGPSGGGLRFEGPHGPSGGGLRLEGPRGQPGLGPRLIDGPVHQGAGGLRFDGPLGRAGP
RFDGCHGAGFDGQPGQLSLLQRFDGIHGQPGPRLAPGQQAQARFETAIPQRFDGPHQPAS
RFDLPLGLQGARFENVANHPASRLEMSPYGQGGPFVEHPGQGYNGPAHGMQFQRPDIFDG
SPGPNFNGPAGPGAQNFPLRAAGHYFEEKGLQGPQYGNFSNMPMGSNQVSLMSAQPGPYG
QGQQYLPNPGSFVQNPAGALSHSYPDNHLGQVDVNELFAKLLKTGILKLSKTDSTSAQAN
ETSAQPTAEEEDDDQNEDQNVPDLTNFIVEELRQRYDSVINRLYTGIQCYSCGMRFTTSQ
TDVYADHLDWHYRQNRTEKDVSRKITHRRWYYSLTDWIEFEEIADLEERAKSQFFEKAHE
EVVLKTQEAAKEKEFQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDEKIY
HPSCYEDYQNTSSFDCTPSPSKTPSENPLNIMLDIVKQETEESCDSPKIKEEPDDTPPAC
TEESTPASTEIKTEPEESV
NT seq
5100 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccccggagagcagcgctggcagcagcgaggcccgggaggacgcgtgccgcgac
taccagtcgtcgctggaggacctgacgttcaacagcaagccgcacatcaacatgctgacc
atcctggccgaggagaacgtgcccttcgccaaggacatcgtctccctgatcgaggcgcaa
atcgccaaggctcctgcatcagagaagctacccgttatgtacctaatggattccattgtc
aagaatgtgggaagagagtatctcacagcatttactaaaaacctagttgcaacatttatt
tgtgtatttgaaaaggtggatgaaaatactaggaaaagtttatttaaattacgctccaca
tgggatgatatttttcctttgaagaaactatatgcacttgatgtcagagtcaactcatta
gatcctgcctggccaattaaacctctgcccccaaatgtgaatacttctagcatccatgtg
aatcctaagtttttaaataaatcgccagaggaatctaatgcacctacctctgctgtcact
tctggtgcctctactcctccagctgttcctgaaatacaaaagaatttgacacaggagcaa
ctgataaggcagcagttgcttgcaaagcaaaaacagttgttagaacttcagcaaaaaaag
ctagagctggagctggaacagactaaagcacagttggctgtatctctcagtgttcagcag
ggatcatctagtatagcttcagttccagcaccttccaagcaacacatgtctcccacacct
catatgacagttaaaccacctcatcaaactgctgtgcaatctgaaaaaaacaaaccatcc
ccaagtcctccacttcatgatatcaaaatagtgaacagggatcctcggcttaataggatg
ggtcaacattcttctcatactaaagatcagtctcacaggaaagaattttcaccaagtgtg
accagtcagtctgagaccaagggaaacaaaacagcacaggctgaaaaacagaactcaaca
aagccagaaaaatcaaaagcaagtgaaaaaacacagaagaaagaacttgaacagtctaaa
gcaaaatctaaatcaccatcccctttaaaaaataagctgcctgatactaaagacagtaaa
agccaggaatgtgaaagcactaaggtttctgacatcagcaagcgggatccaagactgaaa
agacatcttcaagataagtcagaggggaaggaagaggacgtcaaagaaaagaggagaagt
acagagaagaaggaaaaagaggagcataagacatgcgaacatagaccggtggggagcaga
aataaagtgataaatggtgctgttcagaaacaagacgtgattacagaggagtcagaaaaa
cagggtgggaaacaaggaagatcaagtagtagaaaacggtcacggtcacgctctcctaag
gcaagatcaccatctacgcattctccaaaaagacgggagaggagatcacctaaaagaaga
cttcggagtttatctcctacttcatcgactcctaaaattggaaagatacgccagataggc
cctaagcagtctcatgttgaagaaggcacacaagcagcaagagatgaaagaaattctaat
aagagaaatgttaaacaagaggtgcgtgatccaaggagattgaaaaaagcccaagaagaa
cgcccccaagagacagccacccaacattctgcaaaagcttctccagatccaaaggagaat
gcagaaaactggcagggatccaaatcaggcaagaggtggaaatctggttgggaagaaagt
aaaaactcacagcagaatgatgaacaccaagcagttgttaaatcccctcatcaaagacat
cgggaaaactggcctgctggtaaaggaattctatcaccccgagcaccaaagcagcaacac
cggttaagtgtggatgccaatttacagattcccaaagaattgacatctgcaagtaaaaga
gaattacttaagaaggctaatgaccgcttaacatctggagaaataacacaagatgagttt
ctcatggtagctcatcagatccgacagctgttccagtatcaggaaggaaagcacaggtgt
aatgtctgggatagccctacagaggaaaaatgtagtttaaaaaagaaacctcttctatcg
gatgcagaattaacgtattatgaacataaagctaaactaaaaaggacacaagttcagcat
tccttgtcaaggcttgatctgttggatcctgacgatattttggattatcatatacctgat
gcattgctttctggaatagaatgtgagcaggcaaaagccaagcggggagtacagtttgat
agaaaagaaccatttgcagaaagatcaaggagacactctcctgtaagtggcactacaaga
ccttttgctgaaaacctgtcgccacttgagaatcgaagaagacttgaagaccagcgtgct
actaaaggagcaagaggttctgatccttatgacagctggggagaatcggatgaatttaga
gatgctctcagacaacaggggaaaagtacagcagagttccagaaaacagatggagatgca
ctctgtaggtttgataatcgtgaagagagacagcttcttgggcaagctggtggtcgagag
gagccaaggtcaccattcactgaacgtttcaaaagagctaggtatgaagatccagagaaa
gcaccgtttccagaaagtccaggatcaagatttggaggtattgaagcaaagcagaggata
agtgcactgatggaagacagacctctgtttgatggctcacctagaccgactgctgcaagg
gttggggtagatggacaaggcagtccttttgttgatggtcctgctggttcaagttccaga
attgatgggccagctggacaggctgctttgagatttgaggggcctttggtgggggcaggt
gcatctcagtttgatggaccactggcaggagcagggggagctggagccctaagatttgat
gggccaccggggcagctggcagggtccctgagatttgaaggacccccaggccaggttggt
ggaggaggtccactgcggtttgagggacctcttgggcctttgaggtttgaggggcctgca
gggcagcctgtgggtggtgctagatttgaaggtcctggagttggtctcaggtttgagggt
cctcatggtcagccttcaggtggtctcaggtttgagggacctcatggtcaacctatgggg
cctcggggtcaaccagggggtggtctcaggtttgagggaccccatggtcagcccttgggg
cctcatggtcaaccagggggtagcctcaggtttgaggggccacatttgcagccattgggg
ccccatggacaacttggaggtggcctcagatttgaggggccacatggtcagcccatgggg
ccacatgggccatcaggtggtgggctcaggtttgaggggccacatggaccatcgggtggt
gggctgagactggaaggaccacgcggtcagccgggtctaggccctaggttgattgatgga
ccagtacaccagggagctggtggacttagatttgatggtcctcttggtcgggctggtcca
agatttgatggctgtcatggagctggatttgatggtcagcctggacagctgtctctcctg
caaagatttgatggaattcatggacagcctggtccaaggttggcacctggccaacaggca
caagcaagatttgaaacagccatacctcaaagatttgatggacctcaccagccagcctct
aggttcgacttgccccttggccttcagggtgcacggtttgaaaatgtagctaaccatcct
gcctcaagactagaaatgtcaccatatggacaaggtggtccgtttgttgaacatcctggc
cagggctacaatggaccagctcatggaatgcagttccagagacctgatatatttgatggt
tcgcctggaccaaatttcaatgggccagctggcccaggagcacagaacttcccactgaga
gcagctggacattactttgaagaaaaaggtctccagggtcctcagtatggaaatttcagt
aatatgccaatgggaagtaatcaggtttctctcatgtctgctcaaccaggaccttatggc
caaggtcagcagtatttgccaaatcctggaagttttgtccagaaccctgcaggagccctt
tcccattcatatcctgataaccaccttggacaggttgatgtgaatgaattgtttgctaaa
ctgctgaaaacagggatcctcaaattgtctaaaactgattcaacttcagcgcaagcgaat
gaaacatcggcccagccgactgctgaagaagaagatgatgatcagaatgaagatcaaaat
gttccagacctcactaacttcatagtcgaagaacttagacagcgttatgatagtgttata
aatcgactgtacactggaattcagtgttactcctgtggaatgagattcactacttcacag
acagatgtttatgcagatcatttagattggcattatcgccagaaccggacagaaaaagat
gttagcagaaaaataacacacaggagatggtactacagtttaacagactggattgaattt
gaagaaatagcagatctagaggagcgtgctaaaagccagttctttgaaaaagctcatgaa
gaggttgttttgaagacacaggaagctgcgaaagagaaggagtttcagagtgtcccagct
ggaccagctggagcagtggagagctgtgaaatttgccaagaacaatttgaacagtattgg
gatgaggaagaggaagagtggcacctgaagaatgctatcagggtagatgaaaagatttac
catccatcttgttatgaagattaccagaatacatcatcatttgattgcacaccgtctccc
agcaagactccttcagaaaatccactaaatataatgttggacattgttaaacaagaaaca
gaagagtcctgtgactcacctaaaatcaaagaagaacctgatgacacccctcctgcctgt
acggaagagagcacacctgcatctacagaaatcaaaacagaacctgaggagtctgtttaa
DBGET
integrated database retrieval system
