Vidua chalybeata (village indigobird): 128784187
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Entry
128784187 CDS
T11587
Symbol
UPF3A
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
vcha Vidua chalybeata (village indigobird)
Pathway
vcha03013
Nucleocytoplasmic transport
vcha03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vcha00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
128784187 (UPF3A)
03015 mRNA surveillance pathway
128784187 (UPF3A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcha03019
]
128784187 (UPF3A)
Messenger RNA biogenesis [BR:
vcha03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
128784187 (UPF3A)
mRNA cycle factors
P-body specific factors
128784187 (UPF3A)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
128784187
NCBI-ProteinID:
XP_053791490
LinkDB
All DBs
Position
2:26498499..26525029
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AA seq
433 aa
AA seq
DB search
MDAPLPQESPRRDTDAPPNPPPPSPLPPPLHPAPGKQREEKKTALSKVVIRRLPPCLTKE
QLEEQLHPLPAHDYFEFCTADPSLYPHLYSRAYINFRNPEDILLFRDRFDGYVFIDNKGL
EYPAVVEFAPFQKISKKKLKKKDAKAGSIEDDPEYRKFLENYCADEDKICANPEILLGEI
EAKTRELIARRTTPLLEYIKNRKLEKQRIREEKREERRRRELEKKRLREEEKRKRREEER
RKRKEVEKQKKISEKEIRIKLLKKPEKGDELAIEKHKEKGEEADIEENKWDKSPGSGSIK
SKSLESSLKELKEKSQNDSDKEQRDLERRFREKEPERQRIVQPCSCTSQELASEHIWDLQ
VNPMTAVGNPLKMLLIKSMRWIIQLELVLKRLKKQNKTVWGKSLVERNEFKIQHHHKNPL
GCFRIPQAIASTK
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atggacgccccgctgccgcaggagtcgccgcgccgcgacaccgacgctccgccgaacccg
ccgccgccgtccccgctgccgccgccgcttcacccggcgccagggaaacaacgggaggag
aagaaaacggcgctgagcaaagtggttattcgaaggcttcctccttgtctaaccaaggag
caactggaggaacagctgcatcctctacctgcccatgattattttgagttttgcactgct
gatcccagcctttatcctcatctctactcaagagcatacattaactttagaaatcctgag
gacatccttctttttagagatcgctttgatggctatgtcttcattgataataaaggtttg
gaatatcctgcagtggttgagtttgctccattccagaagatttcaaaaaagaagctgaag
aagaaagatgccaaagctgggagcattgaagatgatccagaatataggaaatttttagag
aattattgtgctgatgaagacaagatctgtgctaatcctgagattcttttgggagagatt
gaggccaaaacaagggaactcattgctagaagaacaacaccccttttggaatatattaaa
aatagaaaattagaaaagcagagaatacgagaagagaaaagagaagaacgaaggcggaga
gaattggagaagaaacgtttgcgggaggaagagaaaaggaagcgcagagaagaggaaaga
cgtaaaagaaaagaagtggagaagcaaaagaagatttctgaaaaagaaataaggatcaag
cttctcaagaagcctgaaaaaggagatgaactggccattgaaaagcacaaagaaaaaggg
gaagaagctgacattgaggaaaacaaatgggataaatcacctggatctggcagtataaaa
tcaaaatctttggagagttcactaaaagaacttaaagaaaagtcacaaaatgatagtgac
aaagagcaaagagatttggagagaagatttcgagaaaaagaacctgaaagacaaaggatc
gtccagccatgcagttgtaccagccaggagctcgcatccgaacacatatgggacctacaa
gtaaatcctatgactgcagtgggaaatcctttgaagatgctcttgataaaaagtatgagg
tggataattcagctggagctagttctgaaaagactgaagaagcagaataaaacagtctgg
gggaaaagtcttgtggaaaggaatgaatttaagattcagcatcatcacaaaaatccatta
ggctgtttcagaattccacaggcaattgcatcaacaaaataa
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