Vidua chalybeata (village indigobird): 128786421
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Entry
128786421 CDS
T11587
Symbol
SDC1
Name
(RefSeq) syndecan-1
KO
K06257
syndecan 1
Organism
vcha Vidua chalybeata (village indigobird)
Pathway
vcha04512
ECM-receptor interaction
vcha04514
Cell adhesion molecule (CAM) interaction
vcha04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
vcha00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128786421 (SDC1)
04514 Cell adhesion molecule (CAM) interaction
128786421 (SDC1)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
128786421 (SDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
vcha04131
]
128786421 (SDC1)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
vcha04090
]
128786421 (SDC1)
00535 Proteoglycans [BR:
vcha00535
]
128786421 (SDC1)
Membrane trafficking [BR:
vcha04131
]
Exocytosis
Calcium ion-dependent exocytosis
Acrosomal exocytosis proteins
128786421 (SDC1)
CD molecules [BR:
vcha04090
]
Proteins
128786421 (SDC1)
Proteoglycans [BR:
vcha00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
128786421 (SDC1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Syndecan
Glycophorin_A
Motif
Other DBs
NCBI-GeneID:
128786421
NCBI-ProteinID:
XP_053795642
LinkDB
All DBs
Position
3:complement(103763040..103787102)
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AA seq
309 aa
AA seq
DB search
MINVVAVWLVALCFQAAVPQTTNLNLPPEDLDSSGDEDDVFSGSGAGPLTDQSRTWRIPG
ESTNSSIVAAPVDFSEQPFHGIESRTEKEVISPSATSNPVTEEPVVAVKDEVSILGSPDG
KPTSHVVTTTVRSPTAHFPSVVHVTPSEASAVVHELEPKIPSSDVPDTKDVPEPHSTVHG
EGDIAATPAATAPRDVVPTHEEVSEDGSGDPGDFILTKDEELFPTQNAEVLADSERNAKA
AGASGIMDRKEVLGGVIAGGLVGLVFAVFLVAFMLYRMKKKDEGSYSLDEPKQSNGGYQK
PHKQEEFYA
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
atgataaacgtggtggccgtgtggctggtggccctttgcttccaggctgctgtcccgcaa
actacaaatctgaatcttccccctgaagaccttgattcatctggtgatgaggatgatgtt
ttctcaggttcaggtgcaggtcccctgactgaccagtctcgcacctggagaatcccagga
gaatcaactaattcctcaatagtggcagcaccagtggatttcagtgaacagccgtttcat
gggattgagagcagaactgaaaaggaagtaatatctccttctgcaaccagtaatccagtg
acagaggaaccagttgtagctgtgaaggatgaagtatccatcctgggctcacctgatggg
aaaccaacaagccacgtagtcacaacaacagtgagaagtcccactgctcactttccttcc
gtggttcatgtgactccttcagaagcctctgctgtggtccatgagcttgaacctaaaatc
cccagttctgatgtgccagacaccaaggacgtgcctgagccccactctactgttcatggt
gagggagacatcgctgccacccccgcggccacagctccaagggatgtcgttcctacacat
gaggaggtttctgaagatggctctggagacccgggagacttcatcttaactaaagacgag
gaattgttccccacccagaacgcagaagtactggctgactctgagaggaatgccaaagca
gcaggagcctcgggaattatggacagaaaagaagttcttggaggtgtaattgctggagga
cttgtaggcttggtgtttgcagtgtttctagttgcatttatgctgtacagaatgaagaaa
aaagatgaaggcagctattcactggatgaaccaaaacagtctaatggaggataccaaaaa
ccacacaaacaagaggaattctatgcataa
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integrated database retrieval system
