Vidua chalybeata (village indigobird): 128786665
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Entry
128786665 CDS
T11587
Symbol
HTT
Name
(RefSeq) huntingtin isoform X1
KO
K04533
huntingtin
Organism
vcha Vidua chalybeata (village indigobird)
Brite
KEGG Orthology (KO) [BR:
vcha00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcha03019
]
128786665 (HTT)
04131 Membrane trafficking [BR:
vcha04131
]
128786665 (HTT)
03029 Mitochondrial biogenesis [BR:
vcha03029
]
128786665 (HTT)
Messenger RNA biogenesis [BR:
vcha03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
128786665 (HTT)
Membrane trafficking [BR:
vcha04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
128786665 (HTT)
Mitochondrial biogenesis [BR:
vcha03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
128786665 (HTT)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
HEAT_GCN1
HEAT_2
HEAT_EF3_N
Motif
Other DBs
NCBI-GeneID:
128786665
NCBI-ProteinID:
XP_053796071
LinkDB
All DBs
Position
4:complement(63625074..63702105)
Genome browser
AA seq
3095 aa
AA seq
DB search
MATMEKLTKAFESLRSFQQQQGPAALPEEPLQRPKKELSATKKDRVNHCLTICENIVAQS
LRNSPEFQKLLGIAMELFLLCSEDAESDVRMVADECLNKVIKALMDSNLPRLQLELYKEI
KKNGASRSLRAALWRFAELAHLVRPQKCRPYLVNLLPCLTRISKRPEESVQETLAAAIPK
IMAAFGNFANDNEIKVLLKAFIANLKSSSPTIRRTAAGSAVSICQHSRRAQYFYAWLLNV
LLGLLVPVEDDRPTLLILGVLLTLRYLIPLLQQQVKDTSLKGSFGVTRKETEISPSPEQL
TQVYELTLHYTQHQDHNVVTGALELLQQLFRTPPPELLHALTACGGIAQVSVSKDEPASR
SRSGSIVELIAGGGSSCSPVLARKHKGKVLLGEEEGLDDDSETRSDVSAASFAASVKGEI
TSELASSSGVSTGGSVGSSAADPTGHDIITEQPRSQHTLQSDSVDLAGCDLTSSAAEGED
DEVLSRSSSQISAVQSDATMDLNDGTQASSPISDSSQTTTEGPDSAVTPSDSSEIVLEGA
EGQYSGMQIGQLQDEEDEAANILQDDSSESFRNSSLALQQSHLLKTMSHSRQPSDSSVDR
FTSKEDAADAGDHENKPSRVKGDIGHYTDRDCAPLVHCVRLLSASFLLTGDKGALVPDRD
VRVSVKALAVSCVGAAVALHPESFFSKLYKTPLEAMGEEYEEQYVSDILNYIDHGDPQIR
GATAILCGTIVNSILIKSRFDVEKWLINVRSSTGNLFSLIDCIPLLQKTLKDESSVTCKL
ACTAVRHCIMSLCSSSYSELGLQLIVDLLALKNSSYWLVRTELLETLAEVDFRLVNFLEG
KTESLHRGIHHYTGLLKLQERVLENVVISLLGDEDPRVRHVAAASLMRLVPKLFYNCDQG
QADPVVAVARDQSSVYLKLLMHETQPPSHFAVSTITRAYRGYNMLQSPTDVTMENNLSRV
IAAVSHALTISTTRALTFGCCEALCLLSTTFPVCTWSVGWHCGVSQPSSSDEPQKGCTIG
MAGLVLSLLSSAWFPLDLSAHQDALILTGNLLAASAPKCLKNPWSAEEDANQGAAKQEEP
WPALSDRALVTLVEQLFSHLLKVINICAHVMDDVAPGPAVKAALPSLTNPPSLSPIRRKG
KERESVEQASVPMSPKKSGEASPASRQTDATGPVPTSKSSSVGSFYHLPSYLKLYDVLKA
THANYKVTLDLQNTNEKFGCFLRSALDVLSQILELATLQDIGKCVEEILGYLKSCFNREP
TMATVCVQQLLKTLFGTNLASQYDGLSSNPSKAQGKAQRLGSSNLRPGLYHYCFMAPYTH
FTQALADASLRNMVQAEQEHDASGWFDVLQKVSTQLKTSISSAAKHRADKNAIHNHIRLF
EPLVIKALKQYTTTTSVQLQRQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVG
QFRESEAIIPNIFFFLVLLSYERYHSKQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPI
VHDLFVLRGTNKADAGKELETQKEVVVSMLLRLIQYHQVLEMFILVLQQCHKENEDKWKR
LSRQIADIILPMLAKQQMHIDSHDALGVLNTLFEILAPSSLRPVDMLLRSMFVTPKTMAS
VSTVQLWISGILAILRVLISQSTEDIVLSRIQELSFSPYLISCQAINRLRCGENNMSTPE
DRTEVKQVKYPPEETFSRFLLQLVGILLEDIVTKQLKVDMNEQQHTFYCQELGTLLMCLI
HIFKSGMFRRITAAATRLFTGDGSDGTFYTLESLSDLVQSMIPTHPSLVLLWCHILLLVN
YTNYNWWSEVHQTPKRHSLSTTKLLSPHISGDSDESDLESKHGMCNREIVRRGALILFCD
YVCQNLHDSEHLTWLIVNHVQDLINLSHEPPVQDFISAVHRNSAASGLFIQAIQSRCENL
AAPTTLKKTLQCLEGIHLSQSGAVLTLYVDKLLCTPFRVLARMVDTLACRRVEMLLAATL
QNSIAQLPVEELDRIQEYLQNSGLAARHQRLYSLLDRFRLMVAPDTTSPSPLVTSHPLDG
EDQPPLENVVLDKDWYVSLVRSQCYIKSDSALLEGAELVNRIPQPDLSSFMTSKEFNLSL
LAPCLSLGMNEISRDQKSSLFETARRVTLDHVSSAVQNLPANHQVFQPLLPTEPSAYWKK
LSDIFGDEVMYQSVMTLCRALAQYLLLLSKLPAGLRVPPDKEGDILKFVVMSVEALSWHL
VHDQIPLSVDLQAGLDCCCLTLQQPSLWNLLSSAAHVTYACSLINCIRFIIEAVAVEPGN
QLLSPERKNTSKPLSEGEIDSNVQKTKHIIAACEMIAEMVECLQTVLSLGHKRNSSIPAF
LTPVLKNIIISLARLPLVNSYTRVPPLVWKLGWSPKPSGDFGTVFPEIPVEFLQEKEIFK
EFIYRINTLGWISRTQFEETWATLLGVLVTQPIVMDQEENQQEEDTERTQINVLAVQAIT
SLVLSAMTIPVAGNPAVSCLEQQPRNKALKALDTRFGRKLSVIRGIVEQEIQAMVSKRDN
IATHHLYQAWDPVPSLSPATTGALISHEKLLLQINTEREIGDMDYKLGQVSIHSIWLGNN
ITPLREEEWGEDEEDENDVPAPSSPPTSPINTRKHRAGVDIHSCSQFLLELYSQWILPSN
PSKRTPVILISEVVRSLLAVSDLFTERNQFEMMYTTLTELRKVHPSEDEILVQYLIPATC
KAAAVLGMDKAVAEPVSRLLESTLRSTHMPSRIGALHGILYILECDLLDETAKQLIPIIS
EYLLSNLRGVAHCVNIHNQEHILVMCAAAFYLIENYPLDVGPEFSAGIIQMCGVMVSGSD
ESTPSIIYHCVLRGLERLLLSEQLSRLDSESLVKLSVDRVNVQSPHRAMAALGLMLTCMY
TGKEKVSPSRIPDANPGAPDSESVIVAMERVSVLFDRIRKGFPFEARVVARILPQFLDDF
FPPQDVMNKVIGEFLSNQQPYPQFMATVVYKVFQTLHSTGQSSMVRDWVMLSLSNFTQRT
PVAMAMWSLSCFFVSASTSQWISAILPHIISRMGKSEQVDVNIFCLVAIDFYRHQIDEEL
DRRAFQSVFEVVASPGTPYHRLLTCLQNVHKVTAC
NT seq
9288 nt
NT seq
+upstream
nt +downstream
nt
atggccaccatggagaagctgacgaaggccttcgagtcgctgcgctccttccagcagcag
cagggccccgctgccctgcccgaggagccgctccagagaccaaagaaagaactttcagct
accaagaaagatcgagtgaatcattgtctaacaatatgtgaaaacatagttgctcagtca
ctaaggaattccccagaatttcagaaactgctgggcattgctatggaactctttctcctc
tgcagtgaggatgcagaatctgatgtccggatggttgcagatgaatgccttaataaagtt
attaaagctttgatggattccaatcttcccaggttacagttagaactctataaagagata
aaaaagaatggtgcttcaagaagtctgcgtgctgcactctggagatttgctgagcttgcc
catctagttcggcctcaaaagtgcaggccgtatttggtgaaccttttgccctgtctgaca
cggataagtaagagacccgaagaatcggtacaagagacgctggctgcagcaatacccaaa
atcatggcagccttcggcaattttgcaaatgacaatgagattaaggttttgttgaaggct
ttcatagctaatcttaaatccagttcccccactatccgtcgaacagcagcaggatcagca
gtaagcatctgtcaacattcacgaagagcacagtatttttatgcctggttattgaatgtg
cttttaggcttgttggttcctgtagaagatgatcgtcctactcttttaattctgggtgtt
ttacttacactaaggtatctcatacctttattgcaacaacaagtaaaagataccagcctg
aaaggcagttttggtgtaacaaggaaagaaacagagatttcaccttcaccagaacaactt
acacaggtttatgaactgactctgcactatacccagcatcaggaccataatgttgtgact
ggagctttagaattgctccagcagctctttagaacacccccccctgaactgctccatgcc
ctgactgcctgcgggggcattgctcaggtcagtgtatccaaagatgaacctgccagcagg
agccgcagtgggagcatagtggaacttatagctggaggggggtcttcatgcagccctgtt
cttgcaagaaagcataaaggtaaagtacttcttggtgaagaagaaggcttggatgatgat
tctgaaacccgatctgatgtcagtgctgcatcatttgcagcttctgtgaagggtgagata
accagtgaactggcttcctcatcaggtgtgtcgacaggcgggtcagtggggagctcggct
gctgatcccacgggacacgacatcatcacggagcagccccgttcgcagcatacgctgcag
tcagactccgtggacctggcaggttgtgatctgacaagctcagctgctgaaggggaggat
gatgaagtgctcagtcggagctccagccagatcagtgctgtccagtcagatgccactatg
gatttgaatgatggcacacaggcttcctcaccaattagtgatagctctcagactactaca
gaaggtccagactctgctgtaaccccttcagacagttctgaaattgttttggagggtgct
gaaggacagtattctggaatgcaaattgggcagctacaggatgaggaagatgaagctgca
aatattctccaagatgattcttcagagtccttcagaaattcttctcttgctcttcaacag
tctcacctgctgaaaaccatgagccatagtagacagccctctgatagcagcgtggatcga
tttacatccaaagaagatgcagcagatgctggtgatcatgagaacaagccctccagggta
aaaggggacatcgggcactacactgacagagactgtgctcctctggtgcactgcgtcagg
ctgctgtcggcctccttcctgctcactggggacaaaggagctttagttcctgatagagat
gtgagagtcagtgtaaaagccttggcagtaagttgtgttggagcagccgttgcacttcac
cctgagtccttcttcagcaaactgtataaaacacctctggaggcaatgggagaagagtat
gaagagcaatatgtgtcggacattctgaactatattgaccatggagatccccagattaga
ggagctactgccattctctgtggaacaattgtcaactccattctaattaaatcccgcttt
gatgtggaaaaatggctaataaatgtcagaagctcaacaggaaatctcttttccttgata
gactgcatacctctgttacagaaaacactgaaagacgagtcctctgttacatgcaaactg
gcttgtacagctgtgaggcattgcatcatgagcttatgcagtagcagttacagtgaacta
ggtttgcaattgattgttgacctccttgctctgaagaacagctcatattggcttgtaagg
acagaacttctggaaacacttgcagaggtagattttcggctagtcaacttcttggaagga
aagactgagagcttgcacagaggtattcatcattatactggtctattaaagcttcaggag
agagtacttgaaaatgttgtaataagtctgcttggagatgaagatccaagagtgagacac
gtggctgcggcttccttaatgaggcttgttccaaagctgttttataactgtgatcaagga
caggctgacccagttgtggcagtagcacgagaccaaagcagtgtctacctgaaactcctc
atgcatgaaacacagcccccatctcactttgcagtgagcactatcaccagagcatacaga
ggttacaatatgctgcaaagtccaacagatgtcactatggaaaacaacctttcaagggtt
attgcagcagtttcccatgcattgacaatatccactacaagagcacttacgtttggctgc
tgtgaagctttgtgccttctctccacaacatttccagtctgcacctggagtgtgggatgg
cactgtggtgtttcccagccaagttcttcagatgaacctcagaagggctgcaccattggt
atggctggcttggtcctgtccctcctttcatcagcatggttcccactggacctctcagca
catcaggatgctttgattttgactggaaacttgcttgcagcaagtgctcccaagtgctta
aagaatccctggagtgctgaagaagatgcaaaccaaggtgctgcaaagcaggaggaaccc
tggccagctctgtcagatcgagctcttgtcactttagtagaacagctcttttctcatctg
ctgaaggtcattaatatttgtgcacatgtgatggatgatgttgctcctggtccagcagta
aaggcagcattaccttctctcacaaacccaccttctcttagtccaattcggagaaagggg
aaagagagggagtctgtggagcaggcatctgtgccaatgagccctaaaaagagtggtgaa
gcaagtccagcttctaggcaaactgatgctacaggacctgttccaacaagtaaatcatct
tcagtaggaagcttttatcatcttccatcatacctgaagttatatgatgtcttgaaagca
acccatgctaattataaggttactttggatctccagaacacgaatgagaagtttggatgt
ttcttacggtctgccctagatgttctctctcaaatcttggaacttgctactcttcaggac
attggaaagtgtgtagaagaaattctgggatatctaaaatcatgtttcaacagagagcca
acaatggcaacagtgtgtgtacagcagttattgaaaactttgtttgggacaaatctggct
tctcagtatgatggcttgtcttcaaaccccagcaaggctcaaggcaaagctcagcgcttg
ggttcctccaatctgagacctggtctctaccactattgcttcatggcaccctacacacac
ttcacacaggcccttgctgatgccagtctaaggaacatggttcaggctgagcaggagcat
gatgcttcaggatggtttgatgtgctgcagaaagtttctacacagctgaaaactagcatt
tccagtgcagcaaaacatcgtgctgataagaatgctattcacaatcacattcgtttattt
gaaccccttgtcataaaagcattgaaacaatacacaacaacaacgtcggtacagctgcag
agacaagttctagacttgcttgctcaactggttcagctgcgagttaactactgtcttctg
gattcagatcaggtgtttattggatttgtgctaaagcagtttgaatacattgaagtagga
cagttcagggagtctgaagcaattattcctaatatcttctttttcttggtgttgctgtct
tacgagcgatatcattccaaacaaataattggaattcccaagatcattcagctgtgtgat
gggattatggccagtgggaggaaagctgttacacatgcaataccagctctgcaacccatt
gttcatgatctctttgtgttaagaggaacaaataaagctgatgctggaaaagaactggaa
actcagaaggaggttgtagtgtcaatgctgctgagacttatccagtaccatcaggtgcta
gaaatgttcatcttggtattgcaacagtgtcataaagaaaatgaagacaaatggaagaga
ttgtctcggcaaatagctgacatcattctcccaatgcttgcaaaacaacagatgcatata
gactctcatgatgctttgggagtattgaacactttgtttgaaattttggccccttcatcc
cttcgccctgtggacatgcttttaaggagtatgtttgttactcctaaaacaatggcttct
gtgagcactgtccagctgtggatttctggaattttagctatccttagagttctgatttca
cagtcaacagaagacatcgttctgtcccgtatacaagagctttccttctcaccatatttg
atttcatgtcaagcaatcaacagactgagatgtggagaaaataacatgtctacaccagag
gatcgcactgaggtcaaacaggtgaaatacccacctgaagagacattttccagattctta
ctgcaactggttggaattctactggaagatattgttaccaagcaattaaaagtggacatg
aatgagcagcaacatactttctactgccaggagctgggcacactgcttatgtgcttaata
catatcttcaaatcagggatgtttagaagaatcacagctgccgccaccagactttttaca
ggagatggatctgatggtactttctatacacttgaaagtctgagtgatcttgttcagtcc
atgattcccactcatccttctttagttctcctctggtgtcacatcttgcttcttgtcaat
tataccaactacaactggtggtcagaagtgcatcaaaccccaaagcgacacagcctttct
actactaaattgcttagccctcatatatctggagacagtgatgaatccgacttggaatcg
aagcatggcatgtgcaatcgtgagatagtgagaagaggagccctcattcttttctgtgac
tatgtttgtcaaaacctacatgattcagaacacctgacctggcttattgtgaatcatgtt
caagacttgattaatctgtcccatgagcctccagtacaagactttatcagtgctgttcac
aggaattcagcagccagtggtctcttcatccaggccattcagtcacggtgtgagaatctt
gcagctcccacaaccctgaagaagaccttgcagtgcttggagggaatccacctgagccag
tcaggggctgtgctgaccctgtacgtggacaagctgctgtgcactcccttccgcgtgctg
gctcgcatggtggacacgctggcctgccgccgcgtggaaatgctgctggcagcaacgctg
cagaacagcattgctcagttaccagttgaagaactggatagaattcaggagtaccttcaa
aacagtggattagcagcaagacaccaaagactctactcactcctggataggtttcgtctc
atggtagctccagacacaaccagtccttcacctctggtcacctcacacccactagatgga
gaagaccaaccacctttagagaatgtagtactagataaagactggtatgtgtcactagtg
cggtcacagtgttacatcaagtctgactcagcacttctagaaggagcagagctggtaaat
aggattcctcagcctgacctgagctccttcatgaccagcaaggagttcaacctaagcttg
ttagcaccttgtttaagccttggcatgaatgagatctcaagggaccagaagagcagcctc
tttgaaacagctcggagggtaactctggatcatgtgtcttctgctgtacaaaaccttcca
gccaaccaccaggtttttcaaccactattgccaactgagccatcagcctactggaaaaaa
ctaagcgatatctttggagatgaggtgatgtatcagtctgtgatgacactttgtcgtgca
ctggctcagtatttgttgttactctcaaaactaccagctggtctccgtgttcctcctgac
aaagagggtgatatcctgaaattcgtagtgatgtcagtagaggcactatcatggcattta
gtgcatgaccagattccattaagtgtagatcttcaagctggtctggattgttgctgtctg
acactacagcagcctagtctctggaatttgctgtcttctgctgctcatgtgacatatgct
tgctccttaattaactgcattagatttatcatagaagcagttgctgtggaacctggtaat
caacttctgagtcctgaaagaaagaatacttcaaaacctttaagtgagggggaaattgat
tcaaatgtacagaaaacaaaacacattattgcagcatgtgaaatgatagctgagatggtg
gaatgcttacagactgtcttgtcactggggcacaaaagaaacagcagcatccctgcattt
ctcactcctgtcctcaagaacatcatcatcagtttagcaaggctgcctctagtgaacagc
tacaccagagtgcctcccttggtctggaaattaggctggtcaccaaagccttcaggtgac
tttggcacagtttttcctgaaatcccagtagaatttcttcaagaaaaggaaatctttaag
gagttcatctatcgcattaatacacttggatggatcagccgtactcagtttgaagagact
tgggctactttgcttggtgtgctcgtaactcagcccattgtaatggaccaagaggagaac
cagcaagaggaagatacagagaggacccaaatcaatgttcttgcagtgcaagccataacc
tccctggtgctgagtgcaatgaccatacctgttgcaggcaatccagcagttagctgtttg
gagcagcagccccgcaataaagctttaaaagctctggacacaaggtttgggaggaagcta
agtgttatcaggggaattgttgaacaggaaatccaggcaatggtgtctaagagagataat
attgctactcatcacttataccaagcttgggaccctgttccatcactttctcctgctact
acaggtgctcttatcagccatgaaaaactcttactgcagatcaatactgaacgagaaata
ggagatatggattataaattgggacaggtctctatacactccatatggttaggaaataat
atcactccactgagagaagaagagtggggtgaggatgaagaagacgagaatgatgtaccc
gctccgtcctcaccaccaacctctcctatcaacaccaggaaacaccgggctggtgtagat
atccattcttgttctcagttcttgcttgaactgtacagtcagtggatattgccatccaac
cccagcaagagaacaccagtgattttgatcagtgaagtggtgcgatcacttctggcagtg
tctgacttatttacagaaaggaatcagtttgaaatgatgtacacaacactgacagagtta
cggaaggtgcatccatcagaagatgagattcttgtacagtatttgataccagctacttgt
aaagctgctgctgttcttggaatggataaagctgtggctgaaccagtaagccgactgctg
gaatcaaccctgagaagcacccacatgccaagtcgcattggagctctgcatggaattctt
tacatccttgagtgtgacttgctggacgagacagcaaagcaactcattccaattatcagc
gagtatctgctctccaatttgagaggagtagcacattgtgtgaatatccataaccaagag
cacattttggtaatgtgtgcagctgctttctatttgatcgagaattacccacttgatgta
gggcctgaattctctgcaggaattatacagatgtgtggagtcatggtgtctggaagtgat
gaatcaacaccatccattatttatcactgtgtcctgagaggattggaacgactccttctt
tcagagcagctttccaggctggacagtgagtccctggttaaactgagtgttgacagggtg
aatgtgcagagcccccacagagcaatggcagccctgggattaatgctgacttgcatgtac
acaggaaaggaaaaagtcagccccagccgtatcccagatgcaaatcctggtgctcctgac
agtgaatctgtgattgttgctatggaacgagtatctgtcctttttgataggatcaggaag
ggatttccttttgaagctcgagtagtggctcggattcttccacagttccttgatgatttt
ttccccccacaagatgtaatgaacaaagtcattggggaatttctgtccaatcagcagcca
tacccacaattcatggcaacagtagtttataaggtgttccagacactgcatagcactgga
caatcctcgatggtccgtgactgggtgatgctctctctctctaacttcacacaaagaaca
cccgtggcaatggcaatgtggagtctttcatgtttttttgtcagtgcttccactagtcaa
tggatttcagcaattcttccacatattatcagcagaatgggaaaatcagagcaagtggat
gttaacatcttctgtttggtggccatagacttctaccgacaccagatcgatgaagaattg
gatcggagagccttccagtcggtgtttgaggtggtagcatctccaggaaccccataccat
cgcctgctgacttgtttgcaaaatgtccacaaggtcacagcatgttga
DBGET
integrated database retrieval system
