Vidua chalybeata (village indigobird): 128786708
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Entry
128786708 CDS
T11587
Symbol
RFC1
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
vcha Vidua chalybeata (village indigobird)
Pathway
vcha03030
DNA replication
vcha03410
Base excision repair
vcha03420
Nucleotide excision repair
vcha03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vcha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
128786708 (RFC1)
03410 Base excision repair
128786708 (RFC1)
03420 Nucleotide excision repair
128786708 (RFC1)
03430 Mismatch repair
128786708 (RFC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vcha03032
]
128786708 (RFC1)
03400 DNA repair and recombination proteins [BR:
vcha03400
]
128786708 (RFC1)
DNA replication proteins [BR:
vcha03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
128786708 (RFC1)
DNA repair and recombination proteins [BR:
vcha03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
128786708 (RFC1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
AAA_lid_RFC1
BRCT
AAA
PTCB-BRCT
AAA_14
AAA_22
Rad17
BRCT_2
RNA_helicase
AAA_16
AAA_5
AAA_33
RuvB_N
AAA_30
AAA_17
AAA_18
nSTAND3
AAA_7
TIP49
NTPase_1
AAA_19
Motif
Other DBs
NCBI-GeneID:
128786708
NCBI-ProteinID:
XP_053796185
LinkDB
All DBs
Position
4:50173037..50206887
Genome browser
AA seq
1189 aa
AA seq
DB search
MAPARGTPRPPRSPARRGRDGSAARRAAGVGAKAGAWSRERPARHRDRAATAAAAAAMDI
RKFFGVVPSGKRQECETVKKSEKIKNGEGPSSVRKREKETKVNNSPSEDDSIQKRTKKKR
RIIYDSDSEEEVPSVKKSKKPPEKKAAASKPGKVLKQDPVVYISETDEDDDFANKRISLK
PKENGTSATGCPGTNTGKKEEVKPQAKSKPLSPVKQTPTSALDFFGTRSVQRSEKKLVAS
KRKEPSQSRDSTLDDEAIARQLQLEEDSELERQLHEDEEFARTLAMLDETPQKKKAWKNT
EGEQTVLSINSSPNTTAGYKQSERVKAIDSAGAAKNYSAKPQTKSEQLKGSCLSPQSSDG
KQEEVAEKERGAQNSLSRGKAASGKEEKTTPKKEKISPKKTESISPEDSEKKRNNYQAYR
SFLNREGPKALGSKEIPQGAENCLEGLTFVITGVLECIERDEAKSLIERYGGKVTGNVSK
KTNYLVMGRDCGQSKCEKASTLGTKIINEDGLFDLIRTMPGKKSKYELAAEIEAKKVESK
PKKTPQKAEAGKRNFSPYKREANNKKCKFTPEKGESISSVKKETTAVRKLTDFKCQTVEE
KEAPKPKGNLVSEVNEDGTERLLWVDKYKPVSLKAIIGQQGEQSCANKLLRWLRNWHKNT
LEDGQAKPSKTGSKDDGTGFKAALLSGPPGVGKTTTAALVCKELGYSYVELNASDTRSKN
SLKEVVAESLNNTSIKDFCSGASSSVSGKHVLIMDEVDGMAGNEDRGGIQELIGLIRHTK
VPIICMCNDRNHPKMRSLVHYCLDLRFQRPRLEQIKGAMMSIAFKEGLKIPPPAMQEIIL
AANQDIRQVLHNLNMWCAKDKSLTYDEAKTDASRAKKDIKLGPFDVVRKVFATGEEAARM
SLIDKSDLFFHDYSLAPLFVQENYVHVKPAAAGGNLKKHLVLLSRAADSICDGDIVDRQI
RSKQNWNLLPTQAIYASVLPGELMRGYMSQFPVFPSWLGKFSSTGKHDRIIQELAMHMSL
RTQTCKRTVNMEYLSYLRDALVQPLKDFGADGVQQAITFMDSYCLMKEDVENIMEISTWG
GKPSPFSKLDPKVKAAFTRAYNKEAHLTPYSLSAVKASKRQSGSAATLDLSEDLTVEEIQ
SDEDEQDTVESDAMIKQKKVKSSKLPKREKNEETTKKEGKRKEKTRHLE
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atggccccggcccggggcacgccccggccgccccgcagccccgcccgtcgcggccgtgac
ggcagcgcggcgcgccgggcggcgggagttggcgcgaaggcgggagcatggagccgggag
cgtcccgctaggcacagggaccgcgccgccaccgccgccgccgccgccgccatggatatc
cggaaattctttggtgttgtaccttctggaaagcgacaagaatgtgagactgtgaaaaag
agtgaaaaaattaaaaatggtgaaggaccttcaagtgtgaggaaaagggaaaaggagact
aaggtgaataattcacccagtgaagatgattccatacagaagcggacaaaaaagaagaga
agaataatctatgattcagattcagaagaggaggtgccgtcagtgaaaaaatccaagaag
ccacctgagaaaaaagcagctgcttcaaaacctggtaaagttctaaagcaggatcctgtt
gtttacatctcagagacagatgaagatgatgattttgccaataaaagaatttccctgaaa
ccaaaggagaatgggacgtcagcgactggttgtccaggaacaaatactgggaaaaaagag
gaggtaaaaccacaagctaaaagcaaacccctctctccagtgaaacagactcccacctct
gcacttgatttctttgggacaaggagtgtccaacgctcagaaaagaaactggtagcaagt
aaaaggaaagagccttcccagagcagagacagcacactagatgatgaggccattgctagg
caactgcagcttgaagaagattcagagctggagaggcaactgcatgaagatgaagaattt
gctagaactctggccatgttggatgaaacaccacagaagaaaaaggcttggaaaaacacc
gaaggagagcagacagtactgagcatcaacagcagccctaatacaacagcagggtataag
cagtcagaaagagtgaaagcaatagactcagctggtgcagccaagaattactctgcaaag
ccacaaactaaatctgaacagttgaaaggttcttgtttatccccacaatcatctgatggt
aaacaagaagaggttgctgaaaaggaaagaggtgctcagaattcactatcaagaggaaaa
gcagcttcagggaaagaagagaagacaacaccaaagaaggagaaaatttctcccaagaag
actgagtctataagccctgaggactctgaaaagaagagaaacaattaccaagcttaccga
agcttccttaatcgtgagggtcccaaagcactgggttccaaagagatacctcagggagct
gagaactgcttggaaggcctgacatttgtaattacgggtgttctggagtgcattgagaga
gatgaggccaagtctctgatcgaacgttacggcgggaaagtaactggcaatgtcagcaag
aagacaaattacctggtgatggggcgagactgcggccagtccaagtgtgagaaggcatca
actttaggtacaaaaattattaatgaggatggtctattcgatcttattcgaactatgcca
ggcaaaaagtcaaaatatgagctggcagctgaaatagaggcaaagaaagtggagtcaaaa
cccaaaaagacaccacagaaagctgaagctgggaaaaggaattttagcccctacaaaagg
gaagctaataataaaaaatgcaagtttactcctgaaaaaggagaatccatcagttctgtc
aagaaagaaaccactgctgttcgaaaacttacggactttaaatgtcagactgtagaggag
aaagaagccccaaaaccaaaggggaacttggtttctgaggttaatgaagatggcacagag
agattgctatgggtagataaatataagcctgtatctcttaaggcaattattggacagcag
ggtgagcagagctgtgccaataaactgctccgatggctcagaaactggcacaagaacacc
ttggaagatggacaagcaaaacccagtaaaactggaagcaaagatgatgggacaggcttt
aaagcagcattactttctggtccacctggagttggtaaaactactacagctgctttggtt
tgtaaggaactggggtatagctacgtggagctgaatgccagtgacactcgcagcaagaat
agtctaaaggaagtagttgctgagtcacttaacaacaccagcatcaaagacttctgttct
ggtgcatcttcatcagttagcgggaaacatgtattgatcatggatgaagtggatggtatg
gcaggcaatgaagacagaggagggattcaggagctgattggtttgatccgacacacaaag
gtacccatcatttgtatgtgcaacgaccgcaaccaccctaaaatgcgctccttggtccac
tactgcttggatcttcgttttcagagacctcgtctggaacagatcaaaggtgccatgatg
tctattgcatttaaagaaggtttaaaaattcccccgcctgcaatgcaagagataatcctg
gcagcaaatcaggacatcagacaggttttacataatcttaatatgtggtgtgcaaaagac
aaatcactgacttatgatgaggctaaaacagatgccagcagagccaaaaaggacataaaa
ctgggcccttttgatgtagtccggaaggtttttgctactggagaggaggctgcccgtatg
tctcttatagacaaatcagatcttttcttccatgactattcactagcacctctctttgtc
caagagaactatgtgcatgtgaaaccagctgctgctggaggtaatttaaaaaagcacttg
gtgctcttgagtagagcagctgatagtatatgtgatggtgatatagtggacagacagatt
cgtagcaagcagaactggaatcttcttccaacacaggctatttatgcaagtgttctccca
ggggagctgatgaggggttacatgtcccagtttcctgtctttcccagctggctggggaaa
ttttcatccacaggcaaacatgatcgtatcattcaagaactggcaatgcacatgagtctc
agaactcagacatgcaagaggacagtaaatatggaatatttgtcgtatttgcgggatgca
cttgtccagccattgaaagactttggagcagatggtgtacaacaagctataacatttatg
gactcttactgcttgatgaaagaagatgttgaaaatatcatggaaataagcacgtgggga
ggcaaacccagtcctttttcaaagctggatcccaaggtcaaagcagcttttacacgtgcc
tacaacaaagaggcacatctgactccatattcacttagtgctgtcaaggcatctaaaagg
cagtcaggatctgcagcgaccttagatctgagtgaagacttgactgtggaagagatccag
tctgatgaggatgagcaggatactgttgagagtgatgcaatgattaagcaaaaaaaggtg
aaatcttccaagctgccaaaaagagagaaaaatgaagaaacaacaaaaaaagaagggaaa
agaaaagagaaaacaagacatttagagtaa
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