Vidua chalybeata (village indigobird): 128787048
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Entry
128787048 CDS
T11587
Symbol
SYNPO2
Name
(RefSeq) synaptopodin-2 isoform X1
KO
K24066
synaptopodin-2
Organism
vcha Vidua chalybeata (village indigobird)
Pathway
vcha04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
vcha00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
128787048 (SYNPO2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
vcha04990
]
128787048 (SYNPO2)
Domain-containing proteins not elsewhere classified [BR:
vcha04990
]
PDZ domain-containing proteins
Other PDZ domain-containing proteins
128787048 (SYNPO2)
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Paralog
GFIT
Motif
Pfam:
PDZ
PDZ_6
Calsarcin
PDZ_2
Pept_S41_N_bact
Motif
Other DBs
NCBI-GeneID:
128787048
NCBI-ProteinID:
XP_053796891
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Position
4:complement(15609559..15683583)
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AA seq
1274 aa
AA seq
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MLPNCTRKMGTGDYVCIAMSGGAPWGFRLQGGKEQKQPLQIAKVRSKSKAAKAGLCEGDE
VVSINGKPCGDLTYAEVIVLMESLTDVLQMLVKRSSSGINETLNAERENGKHENIKIEDY
GENTTLQMNIAQKIPHGDLCITEIYSGTHHGAAESNTHFAETKQETTQSHRIPPKVIGTP
KVIVTDEAGVRGSAEEGPGAMVELQVSLSNDAHKATSAPAVTLLGAEKCPPSGRGPSAPQ
GGSSPLIAVPLGVKEGNIQWSNKVVHFSSSKEVKRIQGAAPSIPRVEVILDCSDREKEAP
RSLSERGCVDSQVEGGKSEAPPSLLSFAISPEATVQGEDSKHSEKEHRPLKHRARHARLR
RSESLSEKQVKEAKSKCKSIALLLTAAPNPNSKGVLMFKKRRQRARKYTLVSYGTGELER
DEDEGEEGEGEEGDKENTFEVSLLATSESEIDEDFFSDIDKDGKIVTFDWDSGLLEVEKK
TKSGEEMQTLADSTGKGALMFAKRRQRMDQITAEQEEMKASTVQTEEHRETTVTENFQKV
SSSIYQSKEEDMSRQQSCVSKSYTDMSQNHSKVVQQNGFGLAPGTNLSFQSSGTQKAASL
NKTAKPFPSGVQNRAAAPFSPIRNVTSPLSDAAAPPPYCSVSPPAEAFYRPVSAPVVSKA
APPAWVATEPTEHIASRDERIAVPAKRTGILQEAKRRSTSKPMFNFKDAPKVSPNPALLS
LVHNAEGKKGTGAGFESGPEEDYLSLGAEACNFMQTQASKQKAPPPVAPKPSLKVSPSAS
TPVSPVWSPSVAASNKPSSFPAPASPQAVYPAPPKSPQYPHSPVHPPSTLDLAGPFKGPQ
ASLASPNLAPKATPVTPSAAETKPPFEMPPAMSGKGAQLFARRHSRMEKYVVDSETVQAN
MARATSPTPSLPASWKYSSNVRAPPPIAYNPIHCPSYPPAATKPSSKAAAATKNTKRKPK
KGLNALDIMKHQPYQLDPSLFTFQPPKENLAMKQTSKLSTSKQTLPLPPYLPPGAGSPTW
VRPSSVYSVPAYGSQPSFPSNASLPGNESYSPTGYSAFSKPETTTSSLFTAPRPKFSAKK
AGVTAQGRSSGRSLSLPGTPSSFISRAMSPTSPLVFQPAPDYFSKPDTAADKPGKRLTPW
EAAARSPLGLVDEAFGPQSMQESIAANVVSAARRKTLPEPPDEWKLKVSNEPSATSGSIA
LLGGKQSGVLSLQKSSLSAPSAPTQAGPKLQYPYCTQRSTTDPDIMSMDSRSDYCLSTAD
SNYNPQPRGWRCPT
NT seq
3825 nt
NT seq
+upstream
nt +downstream
nt
atgctgcccaactgcaccaggaagatgggcacaggagattacgtctgcattgctatgagt
ggaggggcaccgtggggcttcaggctgcaagggggcaaggagcagaagcagcctctgcaa
attgccaaggttcgcagcaaaagcaaagcagccaaggctggactgtgtgagggggatgag
gtggtgtctatcaatggcaagccttgtggagacctaacctatgctgaagtcattgttctg
atggaaagcctgactgacgtcctgcagatgcttgtcaagagatcctccagtggaataaat
gaaaccttgaatgctgaaagagaaaatgggaagcacgagaatataaaaattgaggactat
ggggagaacaccacactgcaaatgaacatagcgcaaaagataccccatggagatttatgc
atcacagagatttacagtgggactcaccatggagcagcagagagcaacacacactttgct
gaaacaaaacaagagaccacacaaagccacagaattcctcctaaagtgataggcaccccc
aaagtgattgtgacagatgaggctggtgtcagagggtcggcagaagaagggccaggtgct
atggttgagctgcaggtgtccctctcaaatgatgcccacaaggccaccagtgctcctgct
gtgactctcttgggggcagaaaagtgccccccttcaggcagaggacccagtgcaccacag
ggcgggagcagccccctcatcgcagttcccctgggtgtgaaggagggcaacatccagtgg
tcaaacaaagtagtccacttttctagcagcaaggaggtcaagaggatccaaggtgcagct
ccatctatccccagggtggaggtgatcctagactgctcagacagggagaaggaagcaccc
aggtctctgtctgaaagggggtgtgttgattctcaagtagaaggagggaagtcagaagca
cctccttccctcctctcctttgcaatctcaccagaagccacagtgcagggagaagacagc
aagcactcagaaaaggaacacagacctctcaagcacagggcaaggcacgcaaggctccga
cgaagcgagagcctgtcggagaagcaggtgaaagaagccaaatctaaatgtaaaagcatt
gcactgctgctgacggcagctcccaaccccaattccaagggggtgttgatgttcaagaag
cgccgccaaagggcgaggaaatacactttagtcagctacgggactggggagttagaacgt
gacgaggacgagggtgaagagggtgaaggtgaagagggggacaaggaaaacacttttgag
gtgagcttgcttgcaacgagtgagtcggaaatagatgaagattttttctctgacattgac
aaggacggcaagattgtgacatttgactgggacagtggtctgctcgaggtggaaaagaag
acaaaaagtggagaggagatgcagacgcttgcagacagcacagggaaaggggccctcatg
tttgccaagaggcggcagaggatggatcagataacagccgagcaagaggagatgaaggca
agcacagtgcagacagaggagcacagggaaaccaccgtgacagagaacttccagaaagtg
agctcttccatctatcaatcaaaagaggaggacatgtcaagacagcagagctgtgtgagc
aaaagctacacagacatgagccagaatcacagcaaagtggtacaacaaaatggctttggc
ttagcacctggcacaaacctctcttttcagtcctctggaactcaaaaggcagcatctctg
aataaaacagcaaaacccttcccttccggagttcaaaaccgagcagctgcaccattttca
cccataagaaatgtcaccagtcccctttcagatgcagcagcaccacctccttactgctct
gtcagcccaccagctgaggctttctacagacctgtctcagctcctgtggtcagcaaggct
gccccacccgcgtgggtagccaccgagcccacggaacacatcgcgtccagggatgaaagg
attgccgtgccagccaaaagaaccgggatactgcaggaggcgaagagaagaagcacttcc
aaacctatgttcaatttcaaagatgcacccaaagtaagtcctaatcctgccctgttgtcc
cttgtacacaatgcagagggcaaaaaagggactggagccggttttgagtcaggacccgaa
gaagactacctcagtttgggagcagaagcttgcaatttcatgcagactcaagcatctaaa
caaaaggctcctcctcctgttgctccaaaaccttcactcaaggtgtctccttctgctagt
actccagtttcaccggtttggtcaccttcagttgcagcttccaacaagccttcttctttc
ccagcaccagcttcacctcaggcagtgtatcctgcaccacccaaatctccacagtatcct
cattctcctgtccatcccccaagcactctcgaccttgctggtcctttcaaagggcctcag
gccagcctggcaagtccaaaccttgcccccaaggcaacaccagtcaccccaagtgctgca
gaaacaaagcctccctttgagatgccgccagctatgagtgggaaaggagcacagctgttt
gccaggaggcattcccgaatggagaagtatgtggtggattcagagactgtgcaggcaaac
atggcacgagccacatccccaactccatctttaccagcttcttggaaatattcatctaat
gtccgagcacctccacccatcgcttataatcccatccactgtccatcttaccctcctgct
gctaccaagccttcctctaaggccgctgctgctaccaaaaacacaaaaagaaaacctaag
aaaggtctcaatgctttggatatcatgaaacatcaaccttatcaacttgatccatcttta
tttactttccaacctcctaaagaaaaccttgccatgaagcagacatcgaagctgtccact
tcaaagcaaacactgcctttacctccctaccttccacctggtgctggctctcctacatgg
gtccggccctcttcggtgtactccgtgccagcctacgggtcccagccgtcattcccatct
aatgcctctcttccagggaatgaatcatattcacccacaggctactctgcgttttctaag
ccagaaaccaccacatcctctttgtttactgctccgaggccaaaattttcagccaagaaa
gctggcgtcactgcacagggaaggagcagtggccgctcattatcgcttcctgggacacct
tcttcattcatctctcgagccatgtctcctacttctcctcttgtatttcagcctgcccct
gactacttcagcaagccagacacagcagctgacaagcctggcaagagactgactccctgg
gaagcagcagccagatctccccttggcctcgtggatgaagcttttggcccccaaagcatg
caggaatccattgctgctaacgtggtatcggctgctcgcaggaaaacacttcctgagcca
ccagatgaatggaaacttaaagtttctaatgagccctcagccacaagtggtagcatagcc
ttactgggagggaagcagtcgggggttctgtcactccaaaaaagctccctgtctgcccca
agtgcccccacccaggctggccctaagctgcagtatccctactgcacgcagcgctccaca
acagatcctgatataatgtccatggattccaggtctgactattgcttgtcaacagctgat
tcaaactacaatccacagccaaggggatggaggtgtccaacatga
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