Vidua chalybeata (village indigobird): 128787501
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Entry
128787501 CDS
T11587
Symbol
COL25A1
Name
(RefSeq) collagen alpha-1(XXV) chain
KO
K24356
collagen type XXV alpha
Organism
vcha Vidua chalybeata (village indigobird)
Brite
KEGG Orthology (KO) [BR:
vcha00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
vcha00536
]
128787501 (COL25A1)
Glycosaminoglycan binding proteins [BR:
vcha00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128787501 (COL25A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
128787501
NCBI-ProteinID:
XP_053797647
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All DBs
Position
4:complement(26016921..26311365)
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AA seq
723 aa
AA seq
DB search
MGGGGKEIKAAAAEGCASALGKSRGAAGHDGNGKPGGSGKPGLGKPGCGGDRCPRRAGPV
GSALAALLSALAAASCVYLGVRTSDLQARVAAIEGARGGFSAAAPMPPLPGFSLEQLNAM
MQEKVERLLAQKSYEHLAKIRVAREAAPECNCPPGPPGKRGKRGRRGETGPPGQPGPQGP
PGPKGEKGDQGDQGPRGLPGFPTVAALHSNQILTVKGDQGQAGPPGPPGPPGPRGPPGDT
GKDGPRGMPGLTGEPGKPGEQGLTGPQGPPGQKGSVGVPGVPGKDGQVGEPGLPGIAGEK
GEAGLKGDPGERGEKGDAGENGLKGDTGEKGDPGSSAAGIKGEPGESGRPGQKGEPGLPG
LPGLPGIKGEPGFIGPQGEPGLPGLPGTKGDRGEAGPVGKGERGEPGIPGPKGKTGEPGS
RGPKGSKGDTGERGDTGSAGPRGPPGQKGDQGATEIIDYNGNIHEALQRIATLTVTGPPG
PPGPQGLQGPKGDPGSPGAPGVDGEQGPKGSKGDTGDPGMPGEKGGIGLPGLPGANGMKG
EKGDVGLPGAQGPSMIGPPGPPGPHGPPGPMGPHGLPGPKGEPGLNGLKGLKGEPGQKGD
RGPLGLPGASGLDGKPGARGIDGPVGPHGPAGPKGERGEKGTVGDPGPRGPYGLPGFPGP
RGEKGDIGEKGEKGFRGIKGEKGEPGQPGLDGLDAPCQLGPDGLPMPGCWQKGVTPWLIA
KKR
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atggggggcggaggaaaggaaatcaaagctgccgcagctgaagggtgtgcgagcgcgctg
gggaagagccgaggagccgcaggacacgatggcaacgggaagcccggcggcagcgggaag
cccggcctcgggaagcccggctgcggcggggaccgctgcccgcggcgggccgggccggtc
ggctccgcgctggccgcgctcctctcggcgctggccgcggcttcctgcgtctacctgggg
gtgcggaccagcgacctccaggccagggtcgcggccatcgaaggcgcccgagggggcttc
tctgccgccgccccgatgccgccgctgcccggcttttccttggagcagctgaacgcgatg
atgcaggagaaagtggagcgacttctcgcccagaaatcctacgagcacttggcaaaaata
cgagtagcgagagaagcggctccagagtgcaactgcccaccaggtcctcccgggaaaaga
ggtaagcggggaagaagaggagagactggacctcctggtcagcctggtcctcaaggccct
cctggtccaaaaggcgagaagggagatcaaggtgatcagggccctcggggtctgccaggc
ttccccacagttgctgctctgcacagtaatcagatcctcaccgtcaagggggaccaagga
caagctggaccccctggacctccagggccaccaggacccagaggtcccccaggagatacc
ggcaaagatggtcctcgtgggatgcctggcttaacgggtgagccaggaaaaccaggagaa
caaggattgacaggacctcaggggcctccaggacaaaagggttctgttggagtgcctggt
gttccagggaaagatggacaagtgggtgaacctggtttgcctggcatagcaggagagaag
ggagaagcagggctcaagggtgaccctggagaaagaggagaaaagggggatgctggtgag
aatggactgaagggtgacacaggagaaaagggtgaccctggctcttctgcagctggaatt
aagggtgaacctggtgaatctgggcggcctggacaaaagggtgaaccaggccttcctggg
cttcctggactccctggaataaagggtgaaccaggtttcattggtccacaaggagaacct
gggttgccagggctaccaggaacaaagggtgacagaggagaggcaggccctgttgggaag
ggtgagcgaggtgaacctggaatccctggaccaaaggggaaaacaggtgaacctggatct
agaggccccaaagggtcaaagggtgatacgggtgagagaggtgacacaggatctgcaggt
ccacggggaccacctggacagaaaggtgatcaaggtgcaacagagataatagattataat
ggcaacatccatgaagctctgcagaggattgccaccctgactgtcacgggaccaccagga
ccaccaggaccccaagggctgcaagggccaaagggtgatcctggatccccaggagctcca
ggagttgatggagagcagggtcctaagggctcaaaaggagacacaggtgatcctggaatg
cctggagaaaagggaggaatcggactgcctggcttaccaggagccaatggcatgaaaggc
gaaaaaggagacgttggtttgcctggtgcccaaggtccttcaatgataggaccacctgga
ccaccagggccacatggtcctccaggccccatgggacctcatggactgcctggcccaaag
ggtgaaccagggttaaatggtcttaaaggattgaaaggtgaaccaggtcaaaagggtgac
agagggccccttggtcttccaggagcatctggcttagacgggaagccaggagcccggggc
atagatggcccagttggtccccatggccctgcaggtcccaaaggagagagaggtgagaag
ggaactgtaggtgaccctggaccccgaggaccatacggcttgcctggtttccctggtcct
cgaggagaaaagggtgatataggagaaaagggagaaaagggattccgtggaattaagggg
gaaaaaggggagccaggccagcctggcctggatgggctggatgccccttgccaattgggt
cctgatggattaccaatgcctggctgttggcaaaagggagtcacaccatggctcattgct
aaaaagagataa
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