Vidua chalybeata (village indigobird): 128787758
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Entry
128787758 CDS
T11587
Symbol
CPSF6
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6 isoform X1
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
vcha Vidua chalybeata (village indigobird)
Pathway
vcha03015
mRNA surveillance pathway
vcha03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
vcha00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
128787758 (CPSF6)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
128787758 (CPSF6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcha03019
]
128787758 (CPSF6)
Messenger RNA biogenesis [BR:
vcha03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
128787758 (CPSF6)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RSLD_CPSF6
RRM_1
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
128787758
NCBI-ProteinID:
XP_053798145
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All DBs
Position
5:complement(38175472..38206599)
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AA seq
583 aa
AA seq
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MADGVDHIDIYADVGEEFNQEAEYGGHDQIDLYDDVISPSANNGDAPEDRDYMDSLPPSV
GDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRAN
GQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPCNKQFLSQFEMQSRKTTQSGQM
SGEGKAGPPGGSSRAAFPPSNRGRGRFPGAIPGGDRFPGPAGPGGPPPPFPAGQTPPRPP
LGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPV
PGYGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPA
FFPPPANSGIPTSDSRGPPPTDPYGRPPPYDRGDYGPPGRRFTGNNMSIREKLHIPFYGR
HTKNNTQNSGREMDAARTPLSEAEFEEIMNRNRAISSSAISRAVSDASAGDYGSAIETLV
TAISLIKQSKVSADDRCKVLISSLQDCLHGIESKSYGSGSRRRERSRERDHSRSREKSRR
HKSRSRDRHDDYYRERSRERERHRDRDRDRDRERDREREYRHR
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggcgtggaccacatcgacatctacgccgatgtgggcgaggagttcaaccag
gaggctgaatatggtgggcatgatcagattgatttatatgatgatgtaatttctccatct
gcaaataatggagatgctccagaggatcgcgattacatggattctcttccaccatctgtt
ggggatgatgtaggtaaaggagctgcaccaaatgttgtctatacgtatactggaaagaga
attgccttgtacattggaaatctcacttggtggacaacagatgaagacttaactgaagca
gttcattcactgggggtaaatgacattttggagataaaattttttgaaaatcgtgctaat
ggccagtctaaagggtttgcccttgtgggtgtgggatcggaagcatcctccaaaaagctg
atggatttgttgcctaaaagagaattgcatgggcagaatcctgttgtaactccgtgtaat
aaacagtttctgagtcagtttgaaatgcagtcaaggaaaaccacacagtctggccagatg
tctggggaaggtaaagctggtcccccaggaggaagctcacgagcagcatttccacctagt
aatagaggtcggggccgttttccaggtgccattccaggtggagacagattccctggaccg
gcagggccaggagggccgccaccgcctttcccagctggacaaactcccccacgtcctccc
ttaggtcctcctggcccaccaggcccaccaggccctccacctcctggtcaggttctccca
cctccattagctggacctcctaatcgtggtgatcgtccaccaccaccagttctgtttcca
ggacagccttttggtcagcctccacttgggccacttcctccaggccctccaccaccagtt
ccaggctatgggccaccaccaggtccaccaccacctcagcagggtccacctccacctccg
ggtccatttccccctcgtccacctggccctcttgggccacccctgactcttgctcctcct
ccacatctccctgggccaccgccaggtgctccaccaccggcaccacatgtaaatccagct
ttcttccccccacctgccaatagtggcatacccacttcagacagccgtgggccacctcca
acagatccatatggccgacctccaccatatgacagaggtgactatgggccacctggaagg
cgtttcactggaaataacatgtccataagagaaaaattacatattccattctatgggagg
cacacgaaaaataatactcaaaactcagggagagaaatggatgctgcgaggacacctcta
agtgaagcagaatttgaagaaatcatgaatagaaatagggcaatctcaagcagtgccatt
tcaagagctgtatcagatgccagtgctggggactatggaagtgctatagagaccttggta
actgcaatttccttaatcaaacagtccaaagtatctgcagatgatcgctgcaaagtactt
attagctctcttcaggactgccttcatggaattgagtccaagtcttatggttctggatcc
agaagacgtgaacgatccagagagagggaccacagtaggtcacgagaaaaaagtaggcgc
cacaaatcgcgtagtagagatcgtcacgatgactattaccgggaaagaagccgtgagaga
gagaggcatcgcgatcgtgacagagatcgtgacagagaacgagacagagagagagaatat
cgtcaccgttaa
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