Vidua chalybeata (village indigobird): 128787904
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Entry
128787904 CDS
T11587
Symbol
UPF2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
vcha Vidua chalybeata (village indigobird)
Pathway
vcha03013
Nucleocytoplasmic transport
vcha03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vcha00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
128787904 (UPF2)
03015 mRNA surveillance pathway
128787904 (UPF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcha03019
]
128787904 (UPF2)
Messenger RNA biogenesis [BR:
vcha03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
128787904 (UPF2)
mRNA cycle factors
P-body specific factors
128787904 (UPF2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
128787904
NCBI-ProteinID:
XP_053798453
LinkDB
All DBs
Position
5:66364341..66415492
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AA seq
1271 aa
AA seq
DB search
MPAERKKPANMEEKESQLNNKEKEFSERRPVSTREKPKEDVKVGMKRETLKVPEDKKKKM
EEDKRKKEDKERKKKEEDKVKAEEEQKKKEEEEKKKLEEEEKKKQEEEEKKKQEEEAAQL
KEKEEAHQLHQEAWERHQARKELRSKNQNAPESRPEENFFSRLDSSLKKNTAFVKKLKTI
TEQQRDSLSHDFNSLNLSKYIAEAVASIVEAKLKISDVNCAVHLCSLFHQRYADFAPSLL
QAWKKHFEARKEEKTPNITKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLKNIINADRES
HTHVSVVISFCRHCGDDIAGLVPRKVKTVAEKFNLSFPPSEIISPEKQQPFQNLLKEYFT
SLTKHLKRDHRELQNIERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANSQSLADLLD
ENMPDLPQEKPTPEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLIDLKAFVPAI
LFKDNEKYSQNKDSSKDESRDSKDAKDNKEAAGNEDLELELENLDINDDALELDCGDEAE
DLTKKLLDEQEQEDEEASTGSHLKLIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKANR
RKLVRALFIVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLKGDFKFHVRKKDQINIE
TKNKTVRFIGELTKFKMFSKNDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPESH
LRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYIRKLLYK
DLSKVTTEKVLRQMRKLPWQDAEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDV
GIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFGV
NPDGSPSPLDPPEHLFRIRLVCTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLDV
WTKDHPFPIDIDYMISDTLELLRPKIKLCNSLEEAVRQVQDLEREFLIKLGIVNDKDSKD
SITEGENLEEDEEEEEGGAETEEQSGNESEVNDPEEEEGSDNEEEEGEEEEEENTDYLTD
SNKENETDEENTEVMIKGGGLKHVPCAEDEDFIQALDKMMLENLQQRSGESVKVHQLDVA
IPLHLKSQLKKGPPLGGGEGESESGDTMPFVMLTRKGNKQQFKILNVPMSSQLAANHWNQ
QQAEQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPAPANTNRERRPRYQHPKGAPNA
DLIFKTGGRRR
NT seq
3816 nt
NT seq
+upstream
nt +downstream
nt
atgccagctgagcgcaaaaagccagcaaatatggaagaaaaagaatctcagttaaataat
aaagaaaaagaatttagtgaaaggcgaccagtgagcaccagggagaagccaaaagaagat
gtgaaggttggcatgaagagagagactttaaaggttcctgaagataaaaagaaaaaaatg
gaagaggataaaagaaagaaggaagacaaggagcggaagaaaaaagaagaggataaagta
aaggcagaagaggagcaaaagaagaaagaagaagaagaaaaaaagaaacttgaagaagag
gagaaaaagaaacaagaggaggaagaaaaaaagaaacaagaagaagaagccgctcagctg
aaggagaaggaggaagcacatcagctccatcaggaggcttgggagcgccatcaggcaaga
aaagagctccgcagcaagaaccagaacgcaccggagagtcgtccggaggaaaacttcttc
agcagactggactccagcctgaagaaaaacacagcttttgttaagaagctaaaaaccatt
acagagcaacaaagggattccttgtcccatgactttaatagcctgaatttaagcaaatac
attgccgaagcagtagcttctattgtggaggccaaactgaaaatatcagacgtgaactgt
gctgtgcacttgtgttccctctttcaccagcgatacgctgattttgctccttcgttactt
caggcctggaaaaaacattttgaagcaaggaaagaagagaagactcccaacattaccaag
ttaagaactgatttgcgtttcattgcagaattgacaatagttgggattttcactgacaag
gaaggtttgtctttaatctatgagcagcttaaaaatattattaacgctgatcgagaatcc
cacactcatgtttctgtggttatcagcttttgtcggcactgtggagatgacattgctggt
ttggtaccaaggaaggtaaaaactgttgcagagaagtttaacttgagctttcctcctagt
gagataattagcccagagaaacaacagcccttccagaatttgttgaaggaatactttaca
tctttgaccaaacacctgaaaagggaccacagggagctacaaaatattgaaagacaaaac
agacgcattctccactccaaaggagagctgagtgaagatcgacacaagcagtatgaggag
tttgcaatgtcgtatcagaagctgttggcaaattctcagtctctggctgatcttttggat
gagaacatgcctgacctcccccaagaaaaaccaacacctgaggaacatggacctggtatt
gatattttcactccaggaaagcctggagaatatgacctggaggggggtatctgggaagat
gaagatgctagaaacttctatgagaatctcattgacttgaaggcttttgtgccagcaatt
ttgtttaaagataatgaaaaatattcccagaacaaggattcgagcaaagatgaatcaaga
gattcaaaagatgccaaagataataaggaagcagctgggaatgaggatctggaattggag
ctggagaacctggatattaatgatgatgcactggagttggattgtggagatgaggcagaa
gatcttacaaagaaacttcttgatgagcaagaacaagaggatgaagaagccagtactgga
tctcatttaaaactcatagtagatgcttttcttcagcagcttccaaattgtgtcaacaga
gacctcatagacaaggcagcaatggatttttgcatgaatatgaatacgaaagccaacaga
agaaaactagtacgagcacttttcatagttcctagacaaagattggatttgctaccattt
tatgcaagactggttgccacattgcatccctgtatgtctgatgtagcagaggatctctgt
tccatgctgaaaggagatttcaagttccatgtaagaaaaaaggaccagatcaacattgaa
acaaagaataaaactgtgagatttattggtgagcttaccaagtttaagatgttctccaaa
aacgatactctccactgtttaaagatgcttctgtcagacttctctcatcaccatattgaa
atggcgtgtaccttgctggaaacctgtggaagattcctcttcagatcaccagagtctcac
ctaagaaccagtgttcttttggaacaaatgatgaggaaaaaacaagcaatgcatcttgat
gcacgctatgttacaatggtagaaaatgcctattactactgtaatccccctccagctgaa
aaaactgtgaagaaaaaacgtcctcctttgcaggaatatatccgtaagcttctctacaag
gatctctccaaggtcaccacagagaaggtcctgagacagatgcgcaagctaccttggcag
gatgcagaagttaaggactatgttatatgctgtatgatcaacatctggaatgtgaaatat
aatagtattcactgtgtagccaacctcttagcagggttggtcctttaccaggaagatgtg
ggaattcatgttgtggatggagtactagaggatattcgactaggaatggaggttaatcaa
ccaaagttcaaccaacggcggatcagcagtgccaagtttttgggggagctttacaattat
cgaatggtggagtcagctgtaatatttagaactctgtattccttcacctcatttggtgtg
aaccctgatggcagtcctagtccactggaccctccagaacatcttttcagaatcagactt
gtctgtactatcctcgatacctgcgggcagtattttgacagaggatccagcaagcgaaaa
cttgattgcttccttgtatattttcagcgctatgtgtggtggaaaaaaagtctggatgtt
tggacaaaagaccacccttttcctatagacatagactatatgatcagtgatacactggaa
ctgctgagaccaaagataaagctctgcaattctctggaagaagctgtcagacaggtgcaa
gacttggaacgagaattcttaataaaattgggaattgtgaatgacaaagattccaaagat
tctattacagaaggagagaatttggaagaggatgaagaagaggaggaaggtggagcagag
acagaggaacaatctggaaatgaaagtgaagtaaatgatccagaagaagaggagggctct
gacaatgaggaagaagagggtgaagaagaggaggaagagaacactgattatcttacagac
tccaataaggaaaatgaaaccgatgaggagaatacagaagtaatgattaaaggaggagga
ctgaagcatgtcccttgtgcagaggatgaggacttcattcaggccttggataaaatgatg
ctggaaaatcttcagcaacggagtggtgaatctgttaaagtgcatcagttggatgttgct
attcctctgcatctcaaaagtcagctgaagaagggccccccacttggaggtggagaagga
gagtcagagtctggggacacaatgccatttgtcatgttaacaagaaaaggcaacaaacag
cagtttaagatcttaaatgtaccgatgtcttcccaacttgctgcaaaccattggaaccag
cagcaagcagaacaggaggagaggatgaggatgaaaaagctcactttggatatcaatgaa
cggcaggaacaagaggattatcaggaaatgttgcagtctctggcacagcgtccagctcca
gcaaatactaatcgtgagcggcggcctcgttaccagcacccgaagggagcacctaatgca
gatctaatctttaaaaccggtgggaggagacgttga
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