Vidua chalybeata (village indigobird): 128789098
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Entry
128789098 CDS
T11587
Symbol
SOX6
Name
(RefSeq) transcription factor SOX-6 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
vcha Vidua chalybeata (village indigobird)
Brite
KEGG Orthology (KO) [BR:
vcha00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vcha03000
]
128789098 (SOX6)
Transcription factors [BR:
vcha03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
128789098 (SOX6)
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Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
HMG_WDHD1
HMG_box_2
Phage_holin_7_1
Motif
Other DBs
NCBI-GeneID:
128789098
NCBI-ProteinID:
XP_053800583
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All DBs
Position
6:50017522..50386615
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AA seq
837 aa
AA seq
DB search
MQSYEPLDFTAPRRMSSKQATSPFACAADGEETMTQDLASRDKEEGNSDQHAASHLPLHN
VMHNKPHSEELPTLVTTIQQDPEWDGVISAQHRMESESNKLCSLYSFRNTSTSPNKPDEG
GRDRSELMTSVNFGTPERRKGSLADVVDILKQKKLEEMTRTEQEDSSCMEKLLSKDWKEK
MEKLNTSDLLGEIKGVIQCNFVPLRLQPKTGCPLLKDKKKKKYLILSGTPESLAEKERQL
STMITQLISLREQLLAAHDEQKKLAASQIEKQRQQMDLARQQQEQIARQQQQLLQQQHKI
NLLQQQIQQVQGHMPPLMIPIFPHDQRTLAAAAAAQQGFLFPPGITYKPGDNYPVQFIPS
TMAAAAASGLSPLQLQQLYAAQLASMQVSPGAKMPSTPQPPNTTGALSPTGMKNEKRGTS
PVTQVKDEAAQPLNLSARPKTAEPVKSPTSPTQNLFPASKSSPVTVTNKSGIPSPLSGSL
GRGSSLDILSSLNSPALFGDQDTVMKAIQEARKMREQIQREQQQQQQPHGVDGKLPSMNN
MGLNNCRNEKERARFENLGPQLTGKPNEDGKIGPGVIDLTRPEDAEGSKAVNGSAAKLQQ
YYCWPTGGATVAEARVYRDSRGRASSEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNI
SKILGSRWKSMSNQEKQPYYEEQARLSKIHLEKYPNYKYKPRPKRTCIVDGKKLRIGEYK
QLMRSRRQEMRQFFTVGQQPQIPITTGTGVVYPGAITMATTTPSPQMTSDCSSTSASPEP
SIPVIQSTYGMKTDSGSLPGNEMINGEDEIEMYEDYEDDPKSDYSSENEAHEAVSAN
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atgcaatcatatgagccattggactttacagctcccagaagaatgtcttccaagcaggct
acctctccatttgcatgtgcagctgatggagaggaaacaatgacccaggacttagcatca
cgagacaaggaggagggcaacagtgatcagcatgcagcctctcatctgcctctacacaat
gtcatgcacaacaaacctcactctgaggagctacccaccctggtcaccaccattcagcag
gaccccgagtgggacggagtaatctcagcccaacacagaatggagtcagagagtaataag
ttatgttccctatattccttccgaaatacctctacctcaccaaacaagcccgacgaagga
ggtcgtgaccgcagcgagctaatgaccagtgttaactttggaacgccggagcgccgcaag
ggaagcctagcagatgtggtggacatactgaagcagaagaaactagaagaaatgaccagg
actgagcaagaagattcatcctgtatggaaaagctactttctaaagactggaaggagaag
atggaaaaattaaacacaagtgatctccttggagaaattaaaggggttatacagtgtaat
tttgtgcctctcagacttcagccaaagacagggtgcccacttctgaaggataagaagaaa
aagaaatacttaatcctatcaggtacaccagaaagcctggcagaaaaagagcgacagctc
tctacgatgatcacccagctgatcagcttacgggagcagctcctggctgcccatgatgaa
cagaaaaagctggcagcctcacaaattgaaaaacaacggcagcaaatggaccttgctcgc
caacagcaagagcagattgcaagacaacagcagcaacttctgcaacagcagcacaaaatc
aatctactgcagcagcaaattcagcaggttcagggtcacatgcctccgctcatgatccca
atttttccacacgaccagcggacactggcagcggctgctgcagcccagcagggattcctc
ttccccccaggaataacatacaagccaggtgataactaccctgtgcagttcattccatca
acaatggcagctgctgctgcttctggactcagccctttacagctccagcaactgtatgca
gctcagctggcaagcatgcaagtttctcctggagccaaaatgccatctactccacagcca
ccaaatacaacaggggcactttcacccactgggatgaaaaatgagaagagagggaccagc
ccggtaactcaagttaaggatgaagcagctcagccactgaatctctcagcccgacccaaa
acagctgaacctgtcaaatccccaacatctccaacacagaatctcttcccagccagcaaa
agcagcccagtgacagtgacgaacaagagtggcatccccagcccgctcagtggatctctg
ggaagaggatcctctctagatatcctttccagtcttaattcacctgccctatttggggac
caggacacagtaatgaaagccattcaggaagctcgaaaaatgagagagcaaatccaaagg
gaacagcagcagcaacagcagcctcatggtgttgatggaaaattgccctccatgaataac
atgggtctaaacaactgcaggaatgaaaaggaaagagcaaggtttgaaaatttaggcccg
cagttaacagggaaacccaatgaagatggaaaaattggtcctggtgtcattgatcttaca
aggccagaagatgcagaagggagtaaagcagtgaatggctctgcagctaaactacagcag
tattattgttggccaacaggaggggccacggtggctgaagcccgggtctaccgggactcg
cggggccgcgccagcagcgagccccacatcaagcggccgatgaatgccttcatggtctgg
gccaaggacgagcgccggaaaatcctccaggccttccctgacatgcacaactccaacatc
agcaaaatcctaggatctcgctggaagtccatgtcaaatcaggagaaacaaccttattac
gaagagcaggcacgactaagtaaaatccacctagaaaagtaccctaattacaaatacaag
cctcgaccaaaacgtacctgcattgtggatgggaagaaactgcgtattggtgaatacaag
cagctgatgaggtctcgaagacaggagatgaggcagttttttactgtaggacaacagcct
cagattccaatcaccacaggaacaggagttgtctaccctggtgctattaccatggcgacc
accacgccgtcccctcagatgacatcagattgctccagcacctctgccagccctgagccc
agcatccctgtcatccagagcacttatggtatgaagacggacagcggaagccttcctgga
aatgaaatgataaatggagaggatgaaatagaaatgtacgaggactatgaggatgatccc
aaatcagactatagtagtgaaaatgaagcccatgaggcagtcagtgccaactga
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