Vidua chalybeata (village indigobird): 128789354
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Entry
128789354 CDS
T11587
Symbol
PATL1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
vcha Vidua chalybeata (village indigobird)
Pathway
vcha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128789354 (PATL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcha03019
]
128789354 (PATL1)
Messenger RNA biogenesis [BR:
vcha03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
128789354 (PATL1)
mRNA degradation factors
5'-3' decay
Decapping complex
128789354 (PATL1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
128789354
NCBI-ProteinID:
XP_053801220
LinkDB
All DBs
Position
6:complement(55734660..55743209)
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AA seq
770 aa
AA seq
DB search
MRKLIPPGGHTSLEDCPLDEDEDAFQALGEEDEDIDQFNDDTFGAGAVDDDWQEAHERLA
ELEDKASSSREPDGPVGNDGDVLGDPEDALAERLTRLVIDSELEDPAIMQAVHTRDPPQQ
PGGLNSSIWDSSAVLRRIRGPLLAQEMPSVSVLDYALPQRPPQARDEERDPSERALPRRS
SSPIIGSPPVRAIPIGTPPKQAAIPNFNQQILCPKPVHIRATMQQRYPAPYGERMSPNQL
CNVPNSSLLGHPFPHSVSPVLTHLQRAQLLGGAQAGRMSPSQFARVSGLVGSPLPSVNPK
LLQGRVGQMMSPAGGFRAFFGAPPAPPPSQLPHPPGPGSHLQNLRPQPQMFRPDTTHLHP
QHRRLLHQRQQQNRNQHRSLNGSGGDRGGHRSSHQEQIRKDPYANLMLQREKDWVSKIQM
MQLQSTDPYLDDYYYQNYFQKLEKLAAAEEVHGDGPKKERTKLITPQVAKLEHTYKPVQF
EGSLGKLTVSSVNNPRKMIDAVVTSRSEDDETKEKQVRDKRRQTLVTIEKTYSLLLDVED
YERRYLLSLEGERPALMGERKQKICDMYDNLRGKAPGQDRPSDDHFMQIMCIRKGKRLVA
RILPFLAPEQAADVLMATARNLPFLIKKDAQDEVLPCLLRPFSHVLYHLPLGTVTSLVQQ
LTNLPQSAAAPTNLHLTAVLQNKFGLSLLYLVLSRGEELQSSDTNTELMQDNQWTELMLM
ATRELLRIPQGALAKPVSIPSNLISLFSRYVDQQKLNLLETKLHLVQGIR
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atgaggaagctgatcccccccgggggccacacgtccctggaggactgcccgctggacgag
gacgaagatgccttccaggccctgggggaggaggatgaagacatcgaccagttcaacgat
gacaccttcggggccggggctgtcgatgatgactggcaggaggcgcacgagcggctggcg
gagctggaggacaaggccagctcgagccgggagccggacggtcccgtcgggaacgacggg
gacgttctgggcgatcccgaggacgcgctggccgagcggctcacgcgcctcgtcatcgac
agcgagctggaggacccggccatcatgcaggccgtgcacaccagggatcccccgcagcag
cctggagggctgaattccagcatctgggacagttcagctgtgctacggcgcatccggggg
ccgctcctcgctcaggagatgccgtcagtgtccgtgctggattatgccctgccccagagg
cctccgcaggctcgggatgaggagcgggatccatcggagcgggcgctgccccggcgctcc
tcttcccccatcatcgggagccccccggtccgggccattcccatcggcaccccccccaaa
caggccgccatcccaaacttcaaccagcagatcctgtgtcccaagcctgtccacatccga
gctaccatgcagcagcgttatcctgctccctatggagagaggatgtcccccaaccaactc
tgcaatgttccgaattcctccctcctgggccacccgttcccccacagcgtctctcccgtt
ctcacacacctgcagagagcccagctgctcggaggagcccaggctggccgaatgtccccc
agccagtttgcccgggtgtccgggctggtggggagcccgctgccctccgtgaatcccaag
ctgctccagggcagagttgggcagatgatgtccccggccggagggttccgtgcctttttc
ggggctccccccgccccgcccccctcgcagctgccgcaccccccgggccccggatcccac
ctgcagaacctgaggccgcagccccagatgttccggccggacacgacccacttgcacccc
cagcaccgccggctcctgcaccagcggcagcagcagaaccggaaccagcaccggagcctc
aacggctctgggggggaccgagggggccaccggagcagccatcaggagcagatccgtaag
gatccctacgccaacctcatgctgcagcgggaaaaggactgggtgtccaagatccagatg
atgcagctgcagagcactgatccctacctggatgattattattatcagaattacttccag
aagctggagaagttggcagcagccgaagaagtgcatggtgacggtcccaagaaggagcgc
actaaactcatcacccctcaggtggccaagctggagcacacctacaagccagtgcagttt
gagggctcgctgggaaagctcaccgtctccagtgtcaacaacccccggaagatgatcgac
gccgtggtgacatcccgcagcgaggatgatgagacgaaggagaagcaggttcgggataag
aggcgacagacgctcgtcaccattgagaagacgtacagcctcctcctggacgtggaggac
tacgagcgccgctacctcctgagcctggaaggggagcggccagccctgatgggagagagg
aagcagaagatctgtgacatgtacgacaatcttagggggaaggcacctgggcaggacagg
ccgagcgatgaccacttcatgcagatcatgtgcatccggaaaggaaagcgcctggtggcc
cggatccttcccttcctggctccagagcaagcagccgacgtgctcatggccacggccagg
aacctgcccttcctcatcaagaaggatgctcaggatgaggtgcttccctgcctcttgagg
cccttttcccatgtcctctaccaccttcccttgggaacagtcaccagccttgtgcagcag
ctcacaaacctacctcagagcgccgccgctcccaccaacctgcacctcactgctgtgctc
caaaacaagtttggtctgtccctgctgtacctggtcctgagccgaggggaggaattgcag
agctcggacacaaacacagagctgatgcaggacaaccaatggacggagctgatgctgatg
gcgacccgggagctcctgcggatccctcagggagccttggcaaagcccgtgtccatcccc
tccaacctgatctccctcttctctcgctacgttgaccagcagaagctgaacctgctggag
acaaaattgcacttagtgcaggggatccggtag
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