KEGG   Vidua chalybeata (village indigobird): 128789983
Entry
128789983         CDS       T11587                                 
Symbol
TDP1
Name
(RefSeq) tyrosyl-DNA phosphodiesterase 1 isoform X1
  KO
K10862  tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
Organism
vcha  Vidua chalybeata (village indigobird)
Pathway
vcha03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:vcha00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    128789983 (TDP1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:vcha03400]
    128789983 (TDP1)
DNA repair and recombination proteins [BR:vcha03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     128789983 (TDP1)
SSDB
Motif
Pfam: Tyr-DNA_phospho
Other DBs
NCBI-GeneID: 128789983
NCBI-ProteinID: XP_053802346
LinkDB
Position
6:complement(16988229..17029516)
AA seq 639 aa
MLQEGAHGKWTVSSSDESAEENSDSEKPCTSSLSDPACGRTSGPQYPCSEARKAAHKRRA
SPLKLTDKSLSTDAPPAVKQRPSQEGSGWCLSSSDEEPEDQQKHIYKETVKEEKCDVPEE
HPLNLCKDDKLLENLKEEEYNVTPSEAQDTWDLVTGGNPFRFFLTKVSGIEQNYNSGALH
IKDILSPLFGTLISSAQFNYCIDVGWLVRQYPQEFRKKPLLIVHGEKRESKAELIAQARP
YENISFCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIAEDWYQKTQGIWLSPLYPR
LSKGASGSAGESVTNFKSDLISYLAAYNSPALKEWIDLIQEHDLSETRVYLLGSTPGRYQ
GSDKEKWGHLRLRKLLKEHALSIPAQESWPLVGQFSSIGSMGADGSKWLCSEFQESLVAA
GSSVTTFRKCDVPIHLVYPTVNNVRQSLEGYPAGGSLPYSIQTAQKQLWLHSYFHKWSAE
VTGRTHAIPHIKTYMRLSPDFQKIAWFLVTSANLSKAAWGALEKNGIQLMIRSYELGVLF
LPSAFERCFSPLIFVALLWACCNMSMLGTPEVDTALQGLDKGYFHVGRGKLPERKDSATY
FPVPYDLPPEQYGSKDQPWIWNIPYTDAPDTHGNMWVPS
NT seq 1920 nt   +upstreamnt  +downstreamnt
atgcttcaggaaggcgcacacggtaaatggacagtatctagcagcgatgaaagtgccgag
gaaaattctgacagtgaaaaaccgtgtacatcttcactgtcagatcctgcatgtggtaga
acaagtggaccacaatatccatgctctgaagctaggaaagctgctcacaagagaagagct
tctcccctgaagctcactgataaaagtctttctacagatgcacctccagcagtaaaacag
agaccaagccaagaaggctcaggttggtgcctttctagtagtgatgaagagcctgaagat
cagcaaaagcatatctacaaagaaacagtgaaagaagaaaaatgtgatgtgcctgaagag
catcctttgaatctttgcaaagatgacaaacttttggagaatctgaaagaagaggagtat
aatgtaacacccagtgaagcccaggatacctgggatttggtgactggaggcaatcctttc
aggttttttctcactaaagtcagtggaattgaacagaactataattctggagccctgcac
ataaaagatattttgtctcctctttttggaactctcatatcttctgcccagtttaactac
tgtatagatgtgggatggcttgtaagacagtacccgcaggaattcaggaagaagccgttg
ctgatagttcacggtgagaagagagaatccaaagctgaactaattgcacaagcgcggcct
tatgagaatattagcttttgtcaggctaaactggatattgcatttggaactcaccatacg
aaaatgatgctgttgctgtatgaagaaggtcttcgagttgtgatacatacatccaatctt
attgctgaagattggtaccagaaaactcagggaatatggctaagccctttatatccaagg
ctgtctaagggagcatctggttctgctggtgaatctgtgactaattttaagtctgaccta
ataagttacttggcagcttacaattctcctgcactcaaggaatggatagatctgattcaa
gaacatgatttatcagaaacaagagtgtatctgcttggttctacccctggacgctatcaa
ggcagtgataaagaaaagtggggccatcttagactcagaaagcttttgaaggagcatgct
ttgtcaataccagcacaggaatcctggcctcttgtgggacagttctcaagcattggttca
atgggagctgatggatccaaatggctgtgctcagagttccaggagagcctggtggctgca
ggcagcagtgtgacaactttccgtaaatgcgatgtcccaattcatttggtttatcctact
gtgaacaatgtgaggcagagtctagaaggctatcctgctggtggctcacttccatacagt
atacagacagcacagaaacagctgtggttgcattcctattttcacaaatggtcagcagaa
gtcacgggtcgaactcatgctatacctcacattaagacatacatgagactctctcctgac
ttccagaagattgcttggttcttggtaacaagtgccaatctctctaaagcagcctgggga
gctctggagaaaaatggcatccaactgatgatccgttcttacgaacttggagttcttttc
ttgccttcagcatttgagaggtgcttcagccctctgatctttgtggcccttctgtgggct
tgctgtaacatgtccatgctggggaccccagaggtggatacagcactgcagggattggac
aaaggttactttcatgtaggaaggggaaagcttccagaaaggaaagattcagcaacatat
tttcctgtaccttatgacctcccaccagaacagtatggaagcaaagatcaaccatggatt
tggaatattccttacactgatgcccctgatacacatggaaatatgtgggttccatcataa

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