Vidua chalybeata (village indigobird): 128790084
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Entry
128790084 CDS
T11587
Symbol
CLP1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
vcha Vidua chalybeata (village indigobird)
Pathway
vcha03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vcha00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
128790084 (CLP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcha03019
]
128790084 (CLP1)
Enzymes [BR:
vcha01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
128790084 (CLP1)
Messenger RNA biogenesis [BR:
vcha03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
128790084 (CLP1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
AAA_18
ATP_bind_1
TniB
AAA_22
AAA_16
nSTAND3
MMR_HSR1
CbiA
PduV-EutP
Sigma54_activat
Motif
Other DBs
NCBI-GeneID:
128790084
NCBI-ProteinID:
XP_053802515
UniProt:
A0A851KG91
LinkDB
All DBs
Position
6:56403560..56405835
Genome browser
AA seq
425 aa
AA seq
DB search
MADDGGEEKKQVAKFELERETELRFEVEAAQTVQLELLTGMAEVFGTELTRNKKFTFDAG
AKVAVFTWHGCTVQLSGRTEVAYVSRDTPMLLYLNTHTALEQMRRQAEREDERGPRVMVV
GPTDVGKTTVCRLLLNYAVRLGRRPTFVELDVGQGSVSIPGTMGALYIERPADVEEGFSL
QAPLVYHFGSTTPGTNIKLYNKITSCLADVFNQRCEVNRRASVSGCVINTCGWVKSSGYQ
ALVHAASAFEVDVVVVLDQERLYNELKRDLPHFVRTVLLPKSGGVVERSKDFRRECRDER
IREYFYGFRGCFYPHAFDVKFSDVKIYKVGAPTIPDSCLPLGMSQEDNQLKLVPVTPGRD
MVHHLLSVSTADSADDNISETSVAGFIVVTGVDLERQVFTVLSPAPRPLPKNFLLIMDIR
FMDLK
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgatggcggcgaggagaagaagcaggtggccaagttcgagctggagcgggag
acggagctgcggttcgaggtggaggcggcgcagacggtgcagctggagctgctgaccggc
atggccgaggtgttcggcaccgagctcacccgcaacaagaagttcacgttcgacgcgggc
gccaaggtggccgtgttcacgtggcacggctgtaccgtgcagctcagcggccgcaccgag
gtggcctacgtgtcgcgggacacgccgatgctgctgtacctgaacacgcacacggcgctg
gagcagatgcggcgccaggccgagcgggaggacgagcgcgggccccgcgtcatggtggtg
gggcccaccgacgtgggcaagaccaccgtgtgccgcctgctgctcaactacgccgtgcgc
ctgggccgccggcccaccttcgtggagctggacgtggggcagggctcggtgtccatcccc
ggcaccatgggcgcgctctacatcgagcgcccggccgacgtggaggagggcttctccctg
caggcccccctcgtctaccacttcggctccaccacgcccggcaccaacatcaagctctac
aacaagatcacgtcgtgcctggccgacgtcttcaaccagcgctgcgaggtgaaccggcgg
gcgtcggtgagcggctgcgtcatcaacacctgcggctgggtcaagagctcgggctaccag
gcgctggtgcacgccgcctccgccttcgaggtggacgtggtggtggtgctggaccaggag
cgcctctacaacgagctcaagcgggacctgccccacttcgtgcgcaccgtgctgctgccc
aagtccggcggcgtggtggagcgctccaaggacttccgccgggaatgccgggacgagcgc
atccgcgagtacttctacggcttccgcggctgcttctacccccacgccttcgacgtcaag
ttctccgacgtcaagatctacaaggtgggcgcgcccaccatcccggactcgtgcctgccg
ctgggaatgtcgcaggaggacaaccagctgaagctggtgccggtgacgccggggcgggac
atggtgcaccacctgctgagcgtcagcaccgccgacagcgccgacgacaacatctccgag
accagcgtggccggcttcatcgtggtcaccggcgtggacctggagcgccaggtcttcacc
gtgctgtccccggctccgcggcccctccccaagaacttcctgctcatcatggacattcgc
ttcatggacctcaagtag
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