Vidua chalybeata (village indigobird): 128790380
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Entry
128790380 CDS
T11587
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
vcha Vidua chalybeata (village indigobird)
Pathway
vcha03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vcha00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128790380 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vcha03041
]
128790380 (SF3B1)
03036 Chromosome and associated proteins [BR:
vcha03036
]
128790380 (SF3B1)
Spliceosome [BR:
vcha03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
128790380 (SF3B1)
Complex B
128790380 (SF3B1)
Complex C
U2 SnRNP specific factors
128790380 (SF3B1)
Chromosome and associated proteins [BR:
vcha03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
128790380 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
TPR_DNAAF5
HEAT_EF3_N
HEAT_MROH2B_C
HEAT_ECM29
TPR_IPO5
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
PIK3R4-like_middle
Adaptin_N
Phage_T7_Gp15
Motif
Other DBs
NCBI-GeneID:
128790380
NCBI-ProteinID:
XP_053803016
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All DBs
Position
7:complement(10948893..10972396)
Genome browser
AA seq
1301 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKPALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYPSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPQKIADREDEYKK
HRRMMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGEL
KVVNGAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAKGS
ETPGATPGSKIWDPTPSHTPAGAATPGRDTPGHATPGHGGATSSARKNRWDETPKTERDT
PGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIGTP
AMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAGYVP
IRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDVD
ESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPT
LEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKA
AGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHT
GIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIES
FDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEE
MKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANK
VGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQ
TTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMK
TCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPI
LKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGY
IAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNV
QNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFG
CEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVRD
VYWKIYNSIYIGSQDALIAHYPRIYNDEKNTYIRYELDYIL
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagacccacgaagatatcgaagcacaaattcgagaaattcaagga
aaaaagcctgctcttgatgaagcacaaggagtaggccttgattccacaggatattatgat
caagaaatttatggtggcagtgacagcagatttgctggatatgtcacttctattgcagct
actgaattggaagatgatgatgatgactacccttccacaagtctgcttggccagaagaag
ccaggataccatgctccagtggcattgcttaatgacataccgcaatctactgaacagtat
gatccttttgcagaacaccgtcctcagaagattgcagatcgggaagatgagtacaaaaag
cacaggcggatgatgataatttcccctgagcgtcttgatccttttgcagatggagggaag
actccagaccctaaaatgaatgccagaacgtacatggatgttatgcgtgaacagcattta
acaaaagaagagagggaaattaggcaacaactagctgaaaaagctaaagctggagagctt
aaagtcgtcaatggagccgcttctcagccaccttcaaaacgcaaacggcgttgggatcag
acagctgatcagactcctggtgctacacctaaaaaattgtccagttgggatcaagcagag
actcctggacacactccatctctgcggtgggatgaaactccaggccgtgcaaagggtagc
gaaactccaggtgccaccccaggctcaaaaatctgggatccaacccccagtcatacacca
gcaggagctgcaacacccggccgggacacgcctggtcatgcaacaccaggccatggaggt
gccacttccagtgcacggaaaaatcgatgggatgaaacccccaaaacagaaagagatact
ccgggccatggcagtggctgggctgagacacctcgtacagatagaggtggtgactccatt
ggtgagacaccaaccccaggagcaagcaaaaggaagtcacgctgggatgaaacacctgcg
agccagatgggtggcagcactcctgttctgacacctggcaaaacacccattggtacacca
gctatgaacatggcaacccctacaccaggtcacatcatgagcatgactcctgaacagctg
caggcttggcgctgggagagggaaattgatgagagaaacagaccactttctgatgaggaa
ttggatgctatgtttcctgaaggatataaggttctcccacccccggctggttacgtgccc
atccgtactcctgctcggaagctcacagcaactccgacacccctggggggtatgacaggg
ttccacatgcagacagaggaccgcactatgaagagtgttaatgaccagccatctggcaac
ctgccattcctgaaaccagatgatatccagtacttcgacaagctgctggttgatgttgat
gaatcgactctgagtcctgaggaacagaaggagagaaaaataatgaaattacttctgaaa
ataaagaatggcacacctcccatgcgaaaggctgcgttgcggcaaattactgacaaagct
cgggaatttggagcagggccactgttcaatcagattctgcctctgctgatgtcaccaaca
cttgaagatcaggagcgtcacttgcttgtcaaagtcatcgacagaattctttacaaattg
gatgacttggtccgaccatatgtacacaagatccttgtcgtcattgaaccactgctgatt
gatgaagattactatgctagagtggaaggcagagaaattatttcaaacttggctaaggct
gcaggtttggcaacaatgatctccacaatgcgacctgatattgataacatggatgaatat
gtcagaaatactacagctcgagcctttgccgttgttgcgtctgctctgggcattccttct
ctgttacccttcctgaaagctgtctgtaaaagcaaaaaatcctggcaggccaggcacact
ggcatcaagattgtacagcagattgctattcttatgggttgtgctatcctgccacatctc
aggagcttggttgaaattattgagcatgggctggtggatgagcagcagaaagttcgcacc
atcagtgctttggctattgctgctttggctgaggcagccactccctatggtattgagtca
tttgattctgtcctgaagcccttgtggaagggtatacgtcagcacagaggaaagggtttg
gctgcgtttctgaaggcgattggttacctgattccactcatggatgccgagtatgcaaac
tactacaccagagaagtcatgctgattcttatcagagagttccagtctcctgatgaagag
atgaaaaaaattgtgttgaaggtcgtaaagcagtgttgtggtacagatggtgttgaagca
aactacattaaaacagaaatcttgccacccttcttcaaacatttctggcagcacagaatg
gcactggacagaagaaattacagacagttggttgatacaactgtggagctggcaaataaa
gttggagcagcagaaattatttctagaattgtggatgatctgaaagatgaggctgagcag
tacagaaagatggtcatggaaacaattgagaagataatgggaaatctgggggcagcagac
attgatcacaaactggaagagcagctcattgatggtattttgtacgccttccaggaacag
acaacagaggattctgtgatgctgaatggttttggtaccgtggttaatgctctaggcaaa
agagtgaaaccctatttgccacagatctgtggtacagttttgtggcgtttgaacaacaaa
tcagccaaagtcaggcagcaggctgctgacctgatctctcgtactgccgttgtcatgaag
acttgtcaagaggaaaaactgatgggacacttgggtgttgttttgtatgagtacctaggt
gaagaatatcctgaagtactgggcagcatacttggagcgcttaaggctattgtgaatgtt
ataggtatgcacaagatgacaccaccaatcaaagacctgctgccacggttgacacctatt
ttgaagaacagacatgagaaagtgcaggaaaattgtattgatcttgttgggcgtattgca
gacagaggtgcagagtatgtttctgcaagagaatggatgaggatctgctttgaactgctt
gagttattaaaagctcacaagaaagctatcagaagagccacagtgaacacttttggttat
attgcaaaagctattggacctcacgatgtattggccacactgctaaacaacttgaaagta
caggaaaggcagaacagagtatgtactacagtagcaattgctattgtggctgaaacatgc
tcacctttcacagtgctgcctgcactcatgaatgaatacagagttccagaactgaatgtc
cagaatggtgtgttaaaatctctttctttcctgtttgaatacattggagagatgggaaaa
gattacatttatgctgttacaccattgcttgaagatgctttaatggacagggatctggta
cacaggcaaacagccagtgctgtggtgcagcacatgtcccttggtgtttatgggttcggc
tgtgaagattctcttaatcacttgttaaattatgtgtggcccaatgtgtttgaaacctct
cctcacgtcatccaggcagttatgggggctctggagggcctcagagtcgctattgggccc
tgcaggatgttacagtactgtttacagggtttgtttcaccctgccagaaaagtcagagat
gtttattggaagatctacaattcaatctacatcggatcacaggatgctctgatagcacat
tatccaagaatctataatgatgaaaagaacacctatattcgttatgaacttgattacatc
ttataa
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