Vidua chalybeata (village indigobird): 128792056
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Entry
128792056 CDS
T11587
Symbol
PTCH2
Name
(RefSeq) LOW QUALITY PROTEIN: protein patched homolog 2
KO
K11101
patched 2
Organism
vcha Vidua chalybeata (village indigobird)
Pathway
vcha04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
vcha00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
128792056 (PTCH2)
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Motif
Pfam:
Sterol-sensing
TRA2_N
Patched
Motif
Other DBs
NCBI-GeneID:
128792056
NCBI-ProteinID:
XP_053806119
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All DBs
Position
9:14379455..14401157
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AA seq
1431 aa
AA seq
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MGAAAAAAANGSGGGGAAPAPPAPXLPFRGAAGGRRRTHSPPSAPAPAPARPRRAHGGRR
RARPHITGVPSPASRPAMPAEPPRAAPPPLRAARRKPLPEGRAVGQTTPLWLRARFQALL
FALGCRIQRHCGKVLFVGLLVFGALAVGLRVASIETDIEHLWVEAGSRVSQELRYTKEKL
GEESVYTSQMLIQTPKKDGDNILTQEALQLHLEAALAASKVQVSLYGKSWDLNKICYKSG
VPIIENGMIERMIEKLFPCVILTPLDCFWEGSKLQGGSAYLPGRPDIQWSNLDPLQLMEE
LGQFTSLEGFKELLDKAEVGQAYMERPCLDPRDPQCPSSAPNKQSQQSPDIPAELSGGCH
GFSRKFMRWQQELILGGTTKDSQGKLLRAEALQTMFLLMSPRQLYEHFKDDYEIHDISWS
EEKAGAILEAWQRKFVELAQDSIPPNATQSVHAFSTTTLNDIMKSFSDVSVIRVAGGYLL
MLAYACVTMLRWDCSKSQGAVGLAGVLLVALSVASGLGLCSLLGISFNAATTQVLPFLAL
GIGVDDMFLLAHAFTETSQHIPFKERTGECLKRTGTSVALTSVSNMIAFFMAALVPIPAL
RAFSLQAAVVVVFNFAMVLFVFPAVLSLDLHRREKRRLDILCCFYSPCSSRVIQIQPQEL
ADANDNHACHPSPYGHPGMATSTQITTTVQAFTRCDPSGHHIVTVLPPTSQVCTSPAILL
PHSDPLGSQVFTPSSSTRDLLSQLDEAKGGRDCVPLPFCRWSLADFAREKYAPLLLRTRT
KVVVVVLFLALLGLSLYGTTMVHDGLYLTDIVPRDTKAHAFISAQFKYFSFYNMFIVTKG
GFHYPGAQAALLSLHQAFSTVKYVVREGNRDLPKMWLHYFQDWLRGLQATFDRDWQAGRI
THDSYRNGSEDGALAYKLLIQTGNKKEPFNFNQLTTRRLVDENGIIPPDTFYICLTVWAS
NDPLGFAASQANFYPPPPEWIHDKYDTTGENLRIPAAQPLEFAQFPFYLSGLRRTSDFVE
AIESVRAICQEAAQRHGVLSYPSGYPFLFWEQYIGLRHWFLLAISILLACTFLVCALLLL
NPWTAGIIVSILAMIAVELFGIMGLMGIKLSAIPVVILIASVGIGVEFTVHVALGFLTAA
GSRNVRSAAALEHTFAPVMDGAVSTLLGVLMLAGSEFDFIMRYFFAVLTILTLLGLLNGL
VLLPVLLSVIGPPPEASLVDNGPCLPPPESIPPCLGPGGLYVRRAPAWPATFPEPSNTEH
YTESVGPGSPRGPFVVPPAPAHILLEAGKDPSFPRITVLKPYKDSLDVQGKKEASGPQPS
APLPFGEPCTTLPRDPPQPGPPGTRPAPPAALPTYSTHLQGPAGSYTTVTATASVTVALH
PTLPGSYPTFSPEGFTSSEQDCLDEPSTSGTAVPDTFEMQNMGHHRAGAWR
NT seq
4293 nt
NT seq
+upstream
nt +downstream
nt
atgggcgctgccgcggcggcggcggccaatgggagcggcggcggcggcgcggccccggcg
ccccccgcccgcctcccctttagaggcgcggcgggcggccggcggcgcacacacagccct
ccatccgcaccggcaccggcaccggcacggccccgccgcgcgcatgggggccgccgccgc
gctcggccccacataacgggggtgcccagccccgccagccgccccgccatgccggccgag
cccccccgcgccgcgccgccgccgctccgcgccgcccgccgcaagccgctgcccgagggc
agggccgtgggccagacgaccccgctgtggctgcgggcccgatttcaggcgctgctcttc
gccctgggttgccggatccagcggcactgcgggaaggtgctcttcgtggggctgctggtg
ttcggggctctggccgtgggactacgggtggcctccatcgagaccgacatcgagcacctc
tgggtggaagcgggcagccgggtgagccaggagcttcgctacaccaaggagaagttgggc
gaggagtccgtctacacctcccagatgttgatccagaccccgaagaaggatggtgataac
atcctgacacaggaggccctgcagctccacctcgaggcggccttggccgccagcaaggtt
caagtctcactgtacggaaaatcgtgggatttgaacaagatctgctacaagtcaggtgtc
cccatcattgagaatggcatgattgagaggatgatagagaagctgttcccctgtgtgatt
ctgacaccgctggactgcttctgggaaggctccaagctgcagggaggctcagcctatctc
ccgggccgcccggacatccagtggagcaacctggaccctctgcagctgatggaggagctg
ggccagttcacatccctggaaggcttcaaagagctgctagacaaggcagaggtgggacag
gcttacatggagcggccctgcctggacccccgggacccccaatgtccctccagtgctccc
aacaagcagagccagcagagccctgacatcccggccgaactctcggggggctgccacggc
ttctccaggaagttcatgcgctggcagcaggagctgattttaggtggcacgaccaaagac
tcccagggcaagctgctacgcgccgaggccctgcagaccatgttcctcctcatgagcccc
cggcagctctatgagcatttcaaggatgactacgagatccatgatatcagctggagcgag
gagaaggcaggagccatcctggaggcctggcagaggaaatttgtagagctggcacaggac
tccatccctcccaacgccacacagagtgtccatgctttctccaccaccacactcaatgac
atcatgaagtccttctctgacgtcagcgtcatccgggtggctgggggctacctcctcatg
ctggcctatgcctgtgtcaccatgctgcggtgggactgctccaagtcccaaggggctgtg
ggcctggctggggtcctgcttgtggccctctccgtcgcctccggcctggggctttgctca
ctgctgggcatctccttcaatgcagccaccacccaggtcctgcccttcctggccctcggc
attggggtggatgacatgttcctcttggctcacgccttcaccgagacgagccagcacatc
cccttcaaggagcggacaggtgagtgtctgaagcgcacagggaccagtgtggctctcacc
tctgtcagcaacatgatcgccttcttcatggcagccctggtgcccatccctgccctgcgt
gccttctccctccaggctgcagtggttgttgtgttcaacttcgccatggtgctctttgtt
ttccctgctgtcctgagcctggacctgcaccgccgggagaaacgccggctcgacatcctc
tgctgcttctacagcccttgctcatcaagggtcatccagatccagccccaggagcttgct
gatgccaatgacaaccatgcttgccacccatctccttatgggcaccccggcatggccacc
agcacccagatcaccaccactgtgcaagccttcacccggtgtgacccctcgggccaccac
attgtcaccgtcctgccacccacgtcccaggtgtgcacctcacctgccatcctcctgccc
cacagtgaccccttgggctctcaggtcttcaccccatccagctccacccgggatctgctg
tcccagctggatgaggccaagggcgggcgggactgtgtccccctgcccttctgccgctgg
agcctcgctgatttcgcccgggagaagtacgccccactccttctgcgcacccggaccaag
gtggtagtggtggtgctgttcctggcactgctagggctgagcctctatggcaccaccatg
gtacatgatggcctctacctgacggacatcgtgccacgggacaccaaggcacacgccttc
atctcggcccagttcaagtacttctccttctacaacatgttcattgtcactaagggtggc
ttccactacccgggtgcccaggctgccctgctgagcctgcaccaggccttcagcaccgtc
aagtatgtggtgcgggagggcaaccgcgacctgcctaaaatgtggctccattacttccag
gactggctgcgagggctccaggccaccttcgacagggactggcaggccgggcgcatcacc
catgatagctaccgcaatggctccgaggatggggcactggcgtacaagctcctcatccag
actggcaacaagaaggagcccttcaacttcaaccagctgaccacgcggcgactggtggac
gagaatggcatcatcccccccgacaccttctacatctgcctgacagtgtgggccagcaac
gaccccctgggctttgctgcctcccaggccaacttctaccccccaccccccgagtggatt
catgacaagtacgacaccacgggcgagaacctgcgaatcccagcagcccagccactggag
tttgcccagttccctttctacctgagcgggctgcgtcgcacgtccgacttcgtggaggcg
attgagagcgtacgggccatctgccaggaggccgcccagcgccacggcgtgctgagctac
cccagcggctaccccttcctcttctgggagcagtacatcggcctgcggcactggttcctg
ctggccatcagcatcctgctggcctgcaccttcctcgtctgcgccttgctgctgctcaac
ccctggaccgccggcatcatcgtctccatcctggccatgattgctgtggaattgtttggc
atcatggggctgatgggcatcaagctgagcgccatccctgtggtcatcctcattgcctcg
gtgggcatcggtgtggagtttactgtccatgtggccctgggcttcctgacagctgcgggg
agcaggaacgtgcgctcagccgcagcattggagcacacatttgcacctgtgatggatggt
gctgtctccactctcctgggtgtcctcatgctggctggctctgagtttgatttcatcatg
aggtatttctttgcggtgctgaccatcctgacgctgctggggctgctcaacgggctggtg
ctgctgcctgtgctgctctctgtcatcgggccaccccctgaggcatccctggtggataat
ggtccctgcctacccccaccagagtcgatacccccatgtctgggccctgggggactgtac
gtccggcgcgccccagcctggcccgccaccttccctgagccctccaacacggagcactac
acggagagtgtggggccaggcagcccacggggacccttcgttgtgccccctgccccagca
cacatcctactggaggctggcaaggaccccagcttcccccgcatcactgtgctgaagccc
tacaaggacagcctggacgttcaggggaagaaagaggcttctggccctcagccttcagct
cccctgcccttcggggagccgtgcaccacgctgccccgagatcccccgcagcccggccca
ccgggcacccggccagcgccccccgcagccctgcccacctacagcacccacctgcagggt
cctgccggcagctacaccaccgtcacggccaccgcatcagtgacagtggccctgcacccc
acactgcctggctcctaccccaccttcagccccgagggcttcaccagcagtgagcaggac
tgcctggacgagcccagcaccagcggcaccgcagtgcccgacacctttgagatgcagaac
atgggacaccacagggcaggtgcctggcgctag
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