KEGG   Vidua chalybeata (village indigobird): 128792871
Entry
128792871         CDS       T11587                                 
Symbol
RFC4
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
vcha  Vidua chalybeata (village indigobird)
Pathway
vcha03030  DNA replication
vcha03410  Base excision repair
vcha03420  Nucleotide excision repair
vcha03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:vcha00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    128792871 (RFC4)
   03410 Base excision repair
    128792871 (RFC4)
   03420 Nucleotide excision repair
    128792871 (RFC4)
   03430 Mismatch repair
    128792871 (RFC4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vcha03032]
    128792871 (RFC4)
   03036 Chromosome and associated proteins [BR:vcha03036]
    128792871 (RFC4)
   03400 DNA repair and recombination proteins [BR:vcha03400]
    128792871 (RFC4)
DNA replication proteins [BR:vcha03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    128792871 (RFC4)
  DNA Replication Termination Factors
   ELG1-RFC complex
    128792871 (RFC4)
Chromosome and associated proteins [BR:vcha03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    128792871 (RFC4)
DNA repair and recombination proteins [BR:vcha03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     128792871 (RFC4)
  Check point factors
   HRAD17(Rad24)-RFC complex
    128792871 (RFC4)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid AAA_assoc_2 AAA_lid_RFC1 Rad17 AAA_16 AAA_11 AAA_22 AAA_30 SLFN-g3_helicase Mg_chelatase DUF815 AAA_14 AAA_24 AAA_19 AAA_5 RuvB_N TIP49_C AAA_28 DNAX_ATPase_lid ParB ResIII AAA_7
Other DBs
NCBI-GeneID: 128792871
NCBI-ProteinID: XP_053807706
UniProt: A0A851L479
LinkDB
Position
10:8390112..8402337
AA seq 362 aa
MQAFLKGPASISTKPVAAKEKNAAGSGGEGKRTKPIPWVEKYRPKNVGEVAFQDEVVAVL
KKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPDLFRQRVLELNASDERGIQVIREK
VKAFAQLTASGSRSDGKMCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNY
ISRIIEPLTSRCSKFRFKPLSDSIQQQRLLDVSEKEHVKISNEAISYLVKVSEGDLRKAI
TFLQSATRLMGGKEITEKIITEIAGVIPKETIDELLLGCQSGSFEKLQTLAKNLINEGFA
VAQLVNQLHDTIVESEDYSDKQKSAIVEKLAEVDKCLADGADEFLQLMSLCALVMQQLTQ
NI
NT seq 1089 nt   +upstreamnt  +downstreamnt
atgcaggccttcctcaagggcccggcctctatcagcaccaagcccgtcgctgccaaggaa
aagaacgcggccgggagcggcggggagggcaagaggaccaaacccatcccctgggtggag
aaatatcgtcccaaaaatgtgggtgaagttgccttccaggatgaagttgtagctgtgctg
aagaagtccctggaaggtgctgatcttcccaatctgttgttctatggcccacctggaact
ggaaagacttccactattttagcagctgctagagaactgtttgggcctgatttattccgg
caaagagtccttgagttaaacgcttctgatgagcgtgggatacaagtgattcgggaaaaa
gtgaaggcttttgctcagctaacggcgtctggaagccgttcagatggtaaaatgtgtcct
ccctttaaaattgtgatcctggatgaagcagactctatgacttcagcagcccaggcagcc
ttaagacgcacaatggaaaaagaatctaaaacaacacggttctgtcttatttgtaactac
atcagcagaataattgaacctttaacatctcgatgctccaaattccgcttcaagcctttg
tccgacagtatccaacagcagaggctgttggatgtttctgagaaggaacatgtgaaaatc
agtaatgaggcaatatcatacctggtgaaagtgtcagaaggagacttaagaaaagcaatt
acttttcttcaaagtgccactcgtctaatgggagggaaggagatcacagagaagataatc
actgaaattgctggtgtcatccctaaagaaacaattgatgaactgctattgggctgccag
agtggttcctttgagaaactgcaaacactggcaaagaatctcatcaatgaggggtttgct
gttgctcagcttgtaaaccagctgcatgacaccattgtggagagcgaagattacagcgat
aagcagaaatctgccatagttgagaaacttgcagaagtggacaagtgcctggcagacggt
gctgatgaattcttgcagctgatgagtctctgtgcccttgtgatgcagcagctcacacag
aacatctga

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