Vidua chalybeata (village indigobird): 128794409
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Entry
128794409 CDS
T11587
Symbol
TRPM1
Name
(RefSeq) transient receptor potential cation channel subfamily M member 1
KO
K04976
transient receptor potential cation channel subfamily M member 1
Organism
vcha Vidua chalybeata (village indigobird)
Brite
KEGG Orthology (KO) [BR:
vcha00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
vcha04040
]
128794409 (TRPM1)
Ion channels [BR:
vcha04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
128794409 (TRPM1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSDAT_euk
TRPM2
TRPM_tetra
Ion_trans
LSDAT_prok
YVC1_C
Glutaredoxin2_C
Motif
Other DBs
NCBI-GeneID:
128794409
NCBI-ProteinID:
XP_053810193
LinkDB
All DBs
Position
13:<5538933..5584820
Genome browser
AA seq
1624 aa
AA seq
DB search
RDKQGQKAWIEKTFSKRECIYIIANNKDVTRCCCGQLINQHIPPPPSITANKNEEETKQV
EAQPEKWSVSKHTQAYPTDAYGNLEFQGGGHSNKAMYIRVSYDTKPDSLLHLMVKDWQLE
LPKLLISVHGGLQNFEMQPKLKQVFGKGLIKAAMTTGAWIFTGGVSTGVIRHVGDALKDH
SSKSRGRICAIGIAPWGIVENKEDLIGKDVTRVYQTMSNPLSKLSVLNSSHTHFILADNG
TLGKYGAEVKLRRQLEKHISLQKINTRLGQGVPVVGLIVEGGPNVISIVLECLREEPPLP
VVICDGSGRASDILSFAHKYSEEGGIINESLRDQLLVTIQKTFNYNRNQAHQLFVILMEC
MKKKELITVFRMGSEGQQDIEMSILTALLKGTNASAPDQLSLALAWNRVDIARSQIFVFG
HHWPPLGSLTAPDGTAPEKEKKSPAPQTKAGRGKGKGKKKGGKAKEEPEEETDPRKLELL
NWVNSLEQAMLDALVLDRVDFVKLLIENGVNMQHFLTIPRLEELYNTRLGPPNTLHLLVR
DVKKGNLPPDYHISLIDIGLVLEYLMGGAYRCNYTRKSFRTLYNNLFGPKRPKALKLLGM
EDDEPPTKGKKKKKKKEEEIDIDVDDPEVSRFQYPFHELMVWAVLMKRQKMALFLWQRGE
ESMAKALVACKLYKSMAHESSESELVDDISQDLDNNSKDFGQLAVELLDQSYKHDEQIAM
KLLTYELKNWSNSTCLKLAVAAKHRDFIAHTCSQMLLTDMWMGRLRMRKNPGLKVIMGIL
FPPTILFLEYRSYDDYSYQTSKENEEGKEKEEENADANADTGSRKGDEENGKKKQQSLPI
GTKIYEFYNAPIVKFWFYTISYLGYLMLFNYIILVRMERWPSVQEWIVISYIVTLALEKV
REILMSEPGKLSQKIKVWLQEYWNITDLVAISVFIIGAILRLQNQPYMGYGRVIYCVDII
FWYIRVLDIFGVNKYLGPYVMMIGKMMIDMLYFVVIMLVVLMSFGVARQAILHPDEEPSW
RLARNIFYMPYWMIYGEVFADQIDPPCGDNLYDDDGKRLPPCIPGAWLTPAIMACYLLVA
NILLVNLLIAVFNNTFFEVKSISNQVWKFQRYQLIMTFHDRPVLPPPMIIFSHIYIIIKR
ICCRCKKGDGDQDERDRGLKLFLNDEELKKLYEFEEQCVEEYFQEKEDEQQSSNDERIRV
TSERVENMSMRLEEVNEREHFMKASLQTVDLRLSQLEELSGRMVNALEKLAGIDKSELTY
TRSRASSECDAAYLLRQSSVNSSDGYSMYKYHIGADELTYDDSTTPMSPAMHKKAHSIGT
KEDGADPRMLAPEQQTGLHTSSSSAVATADHSKSTLEIAQNVSRPHSGSGGLGSEKQGVF
SSDGMIPQSVNQMNAVTNSQSVAGPDFQNTQLKVERTKLEATISYPLDKSKAMRYFPPET
FSACQTTMMKSRSFIFAQGGKLVGGVDNWTSEYSTIMDEVCPSTIEQWATEWKYEVEQQL
SQERPPEYPGLISEAERQAEEKQMDTDDDSNVGEAGMSASYTSMPAPVKAEKENFLSAKP
ERTPGFPSVRSKSLHSHSQKAKSVKDKLNRPGHASSVTNLVVAFGSATEEQKTRQENAST
ETEC
NT seq
4875 nt
NT seq
+upstream
nt +downstream
nt
agggacaagcagggtcagaaggcttggatagagaagaccttttctaaaagagaatgcatc
tatataattgccaacaacaaagacgttaccaggtgctgctgtggccagctcattaaccaa
catattccacctcctccaagtataacagctaataaaaatgaagaagaaacgaagcaagtg
gaagctcagccagagaaatggtctgtcagtaaacacacccaagcatacccaacagatgcc
tatggaaacctggaattccagggaggaggacattcaaataaggccatgtacatccgtgtg
tcatatgacactaaaccagattctctgctgcatctcatggtgaaagattggcaactggaa
ctgcccaagctcttaatctctgtccatggaggcctccagaattttgaaatgcaaccgaaa
ttaaagcaagtgtttggaaaaggtctgataaaggctgccatgaccacaggagcttggatt
ttcactggtggtgttagtacaggtgtcattcgtcatgtgggagatgccttgaaagatcat
tcttccaaatccagaggacgaatatgtgccataggaattgcaccgtggggcattgtagaa
aacaaggaagatctaataggaaaagatgtaacacgagtttaccaaacaatgtcaaaccct
ttaagtaagctctctgtgctcaacagctcccacacccacttcattctggcagacaacggc
acattaggtaaatatggagctgaagtaaagttacggcgtcagctggaaaaacacatttcc
ctccagaagattaacacacgactggggcaaggcgttcctgtagttgggctcatagtagaa
ggaggtcccaacgtgatctccattgtcttggagtgtctgcgggaagaaccccctctccca
gtggtgatctgcgatggcagcgggcgagcgtctgacattctgtcatttgcacacaagtat
tcagaggaaggagggataataaatgaatcccttagggaccagcttctagttaccatccag
aaaacctttaactacaacaggaatcaagctcatcagctgtttgtcattcttatggagtgc
atgaaaaaaaaagaacttatcactgtgttccgcatgggctcggaagggcagcaggacatt
gagatgtccatcctaactgctctcctcaaaggtaccaatgcatctgctccagaccagctc
agcctggctttggcctggaatcgtgtagacattgcacgcagccaaatctttgtctttgga
caccactggccacctttaggaagccttacagctcctgatggtacagctcctgagaaggaa
aagaaatctccagcacctcagactaaagcaggcagagggaaaggaaaaggaaagaaaaag
ggaggaaaagcaaaagaagaaccagaagaagaaacagacccaagaaaacttgaactcctg
aactgggtgaactccctggagcaggctatgctggatgcactggtcctggatcgagtggac
tttgtgaaactgcttattgagaatggagtgaacatgcagcacttcctgactattcctcgc
ctggaggaactttataatactagactgggtccaccaaatacgctgcatttgctagtcaga
gatgtgaaaaagggaaatcttccaccagactatcatatcagcctaatagatattggtctt
gtcctggaatatctcatgggtggagcctatcgctgcaactatactcggaaaagttttcgg
actctttataataatttatttggaccaaagaggccaaaagctcttaaactactgggaatg
gaggatgatgagcctcccaccaaagggaagaagaaaaagaagaaaaaggaggaagagata
gatattgatgtggatgacccagaagtcagccgctttcagtacccctttcatgagctgatg
gtgtgggctgtgctcatgaaacggcagaagatggccctgttcctttggcaacgaggggag
gaatccatggccaaggcacttgtggcttgtaaactctacaagtctatggcccatgagtct
tcggagagtgagctggtggatgacatttctcaggatctggacaacaactcaaaagatttt
ggccagctggctgttgaactcttggatcagtcctataaacatgatgagcagattgccatg
aaactgctgacatatgagctgaaaaactggagtaattctacctgcctgaagttggctgtg
gcagctaaacacagggacttcattgcacacacctgcagccagatgctcctgacagacatg
tggatggggcgactgcgtatgcggaaaaaccccggccttaaggttataatgggaattctc
ttccctcccaccatccttttcctggagtatcgcagttatgatgactattcctaccagaca
tcaaaagaaaatgaggaaggcaaagaaaaagaggaggaaaatgcggatgcaaatgcagat
acaggctcccgaaaaggggatgaagagaatggaaagaaaaaacaacagagccttccaatt
ggaacaaagatctatgaattctataatgcacctattgtcaaattttggttctacacaata
tcataccttggttacttgatgttatttaattacatcatcttggtgcggatggaacggtgg
ccatcagtccaggaatggattgtcatctcctacattgtcacactggctttggagaaagtc
agagagattctaatgtcagagcctggcaagctgagccaaaaaatcaaagtttggctccag
gagtactggaatattactgacctggtggctatttcagtgtttatcataggagcaattctt
cgcctgcagaaccagccttacatgggttatggaagagtgatttactgtgtagatatcatt
ttctggtacattagagtactagatatctttggtgtgaacaaatatctgggaccttacgtc
atgatgattggaaagatgatgattgacatgctgtactttgtggtcatcatgcttgtggtt
ctgatgagctttggagtagcccgccaggctatcctgcatccagatgaggagccctcctgg
agactggctcgcaacatcttctacatgccctactggatgatctacggagaggtgttcgct
gaccagatagaccctccttgtggggacaatctttatgatgatgatggtaaacgcctccct
ccatgcatcccaggggcctggctcactcctgctattatggcctgctaccttttagtagca
aatatcctgttggtaaacctgctgattgctgtcttcaacaataccttctttgaggtaaaa
tcaatatccaaccaagtctggaagttccagcggtaccagctgatcatgacattccatgac
agacctgtcctgccaccaccaatgattatcttcagccacatctacatcatcatcaagcgg
atctgctgccgctgcaagaagggtgatggagaccaggacgagcgtgacaggggactgaag
ttgtttctgaatgatgaagagctaaaaaaactctatgagtttgaagagcagtgtgtagaa
gaatacttccaggagaaagaggatgagcagcagtcatctaacgatgaacgcatcagagtt
acctctgaaagagttgaaaatatgtctatgaggctagaagaagtgaatgaaagagaacat
tttatgaaagcttctctccagacagtcgacctgcggctgtctcagctggaggagctctcc
ggtcggatggtgaatgctctggagaagctggcgggcatcgacaaatctgagctgacgtac
acgcgctcgcgggcttcgtcagagtgtgatgctgcctatctcctgaggcagagcagtgta
aacagctctgatggctacagcatgtacaaataccacatcggtgctgacgagctgacctat
gatgacagcaccacgcctatgtcaccagccatgcataaaaaagcccactccattggtacc
aaagaagatggagcagacccaaggatgttggctccagaacagcaaactggactccacacc
tcgagttctagtgcagtcgctacagcagatcacagtaaatctacattagaaattgcacag
aatgtttccagaccccattctggttcaggcggtttggggagtgaaaagcagggggttttc
agtagcgatggaatgattcctcaaagtgtaaaccagatgaatgctgttacgaacagtcag
tcagtagcaggaccagattttcagaacactcagttaaaagtagaacgtaccaagttagaa
gcaaccatctcttatcccttggacaaatccaaagcaatgcgctattttcctcctgaaact
ttcagtgcttgtcaaaccactatgatgaagtcaaggagctttatttttgcacaaggtgga
aagctggttggaggagttgacaactggacctcggagtacagtaccattatggatgaggtg
tgcccttctacaattgaacagtgggccacggagtggaaatacgaagttgagcagcagctt
tctcaagagcgtcctccagaataccccgggttgatctctgaagcagaaaggcaagcagag
gagaagcagatggacacagatgatgacagtaatgttggtgaagcaggtatgagtgcctct
tacacctctatgcctgcccctgtcaaggctgagaaggagaatttcctgtcagcaaagcca
gaaaggactcctgggttcccatcagtacgctccaagagtttgcacagccattcccagaaa
gccaagtctgtgaaggacaaattaaatagaccaggacatgccagcagtgtaactaatttg
gtggtagcgtttggcagtgcaacagaagaacagaaaaccaggcaagaaaatgcatccaca
gaaactgaatgttaa
DBGET
integrated database retrieval system
