Vidua chalybeata (village indigobird): 128795026
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Entry
128795026 CDS
T11587
Symbol
THOC2
Name
(RefSeq) THO complex subunit 2 isoform X1
KO
K12879
THO complex subunit 2
Organism
vcha Vidua chalybeata (village indigobird)
Pathway
vcha03013
Nucleocytoplasmic transport
vcha03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vcha00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128795026 (THOC2)
09122 Translation
03013 Nucleocytoplasmic transport
128795026 (THOC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcha03019
]
128795026 (THOC2)
03041 Spliceosome [BR:
vcha03041
]
128795026 (THOC2)
Messenger RNA biogenesis [BR:
vcha03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
128795026 (THOC2)
Spliceosome [BR:
vcha03041
]
Complex C
Other components
EJC/TREX
128795026 (THOC2)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
128795026 (THOC2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
128795026
NCBI-ProteinID:
XP_053811403
LinkDB
All DBs
Position
14:10104028..10153006
Genome browser
AA seq
1594 aa
AA seq
DB search
MAALLPAEWIKNWEKGGKSEFVQLCRALSENKNHDVGFRDIQQALYELAYHVVRGNLKHD
QASNVLGDVIEFREDMPSILADVFCILDIETSCLEEKNKRDHFTQLVLACLYLVSDTVLK
ERLDPETLESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKLIAELGQDLS
GNITSDLILENIKSLIGCFNLDPNRVLDIILEVYECRPEYDDFFVPLIESYMYMCEPQTL
CHILGFKFKFYQDPSGETPSSLYRVAAVLLQHNLIDLEDLYVHLLPGDNAIIEEHKREIV
EAKQIVRKLTMVVLSSEKTEEKEKEKEKEEEKTEKPPDNQKLGLLEALLKIGDWHHAQSI
MDQMPPFYSTSHKPIAIALCRLVHVTIEPLYRRVGVPKGAKGSPISSLPNKRAPKQAESF
EELRKEVFNMLCYLGPHLSHDPILFAKVVRLGKAFMKEFQSDGSKQEDKEKMETLFSCLL
SITDQVLLPSLSLMDCNACMSEELWGMFKTFPYQYRYRLYGQWKNETYNSHPLLVKVKAQ
TIDRAKYIMKRLTKENVKPSGRQIGKLSHSNPTILFDYILSQIQKYDNLITPVVDSLKYL
TSLNYDVLAYCIIEALANPEKERMKHDDTTISSWLQSLASFCGAVFRKYPIELAGLLQYV
ANQLKAGKSFDLLILKEVVQKMAGIEITEEMTMEQLEAMTGGEQLKAEGGYFGQIRNTKK
SSQRLKDALLDHDLALPLCLLMAQQRNGVVFQEGGEKHLKLVGKLYDQCHDTLVQFGGFL
ASNLSTEDYIKRVPSIDVLCNEFHTPHDAAFFLSRPMYAHHISSKYDELKKAEKGNKQQH
KVHKYITSCELVMAPVHEAVISLHLPKVWDDISPQFYATFWSLTMYDLAVPHSSYDREVN
KLKVQMKAIDDNQEMPPNKKKKEKERCTALQDKLLEEEKKQLEHVQRVLQRLKLEKDNWL
LAKSTKNETITKFLQLCIFPRCIFSAIDAVYCAHFVELVHQQKTPNFSTLLCYDRVFSDI
IYTVASCTENEASRYGRFLCCMLETVTRWHSDRVIYEKECGNYPGFLTILRATGFDGGNK
ADQLDYENFRHVVHKWHYKLTKASVHCLETGEYTHIRNILIVLTKILPWYPKVLNLGQAL
ERRVHKICQEEKEKRPDLYALAMGYSGQLKSRKPFMIPENEFHHKDPPARNAVPATVQNG
PGGAGMPTSLTINTVRLEEGTTEETADKLKEKSQGVVKVINKTVNATPKVTTSNGNSASN
SKIIKEKDDKEKSGKEKDKEKKDKTPAATPEMKALGKDGKDKPKEERANKDEKAREIKEK
TPKSDKEKEKVKKEEKASKEEKSKTVVTIIESKSTAEKEREKEPSRERDLAKEMKSKENA
KGGEKVPVAGSLKSPVPRSETSESEREQKRRKVDTHSSPSHSSTVKDNLNELKDSSAKHY
INHTTPTLSKSKEREVEKKDLDKSRERSREREKKDEKDRKDRKRDHSNSDREVPQDSTKR
RKEENGTTGSSKHSKSESPSDSPRLNEKEKEKNKSKSSGKEKGDSIKAEKMEKSSSGSKK
ESRHDKEKAEKKEKRDSTGGKEEKKHHKSSDKHR
NT seq
4785 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgctgctcccggccgagtggataaagaactgggagaaaggcggcaagagcgag
tttgtgcagctgtgtcgtgctctcagtgaaaacaaaaatcatgatgtgggtttcagagat
attcagcaggctttgtatgagcttgcttaccacgttgtcagaggaaacttaaagcatgat
caagcttctaatgttcttggtgatgtcatagaattccgagaagacatgccttctatccta
gctgatgtattctgcatattagatattgaaacaagttgtttagaagaaaaaaataagagg
gatcattttacacagctggtattggcctgtttgtatcttgtatctgacactgtcctaaag
gagcgtttagatccagagacactggagtcattgggactcatcaagcagtctcaacagttc
aatcaaaaatctgttaaaataaagacaaaactattttataagcaacagaagtttaatttg
ctaagagaggagaatgaaggttatgcaaagctcattgcagaattgggtcaagacttatct
ggaaatatcactagtgatttaatccttgaaaatatcaaatctttaataggatgtttcaat
cttgatcctaacagagttttggatatcatcctagaagtctatgagtgcaggcctgagtat
gatgatttctttgtaccactgatagagtcttacatgtacatgtgtgagcctcaaactcta
tgccatatccttggattcaaattcaaattttatcaggatccaagtggtgagaccccttcc
tccttatacagagttgctgctgtccttttgcaacataatctcatagatttggaagatctt
tatgttcatcttctaccaggggataatgccatcattgaggaacacaagcgagagatagta
gaagctaaacaaattgtcagaaaacttacaatggtcgtcttatcatctgaaaagactgag
gaaaaggagaaggaaaaggaaaaagaggaggagaagactgaaaagcctcctgataatcaa
aaacttggcttattggaagccttactaaaaattggtgattggcaccatgcacaaagtatt
atggatcagatgcctccattttactctacttcgcacaagccgattgcgatcgcgctttgc
cggctggtccacgtgacaattgagcctctgtaccgcagagttggtgtacctaaaggagct
aaagggtcaccaatttcctctttgccaaacaagagagcaccaaaacaagcagagagcttt
gaggaattgagaaaggaagtgttcaatatgctttgttaccttggtcctcatctgtcccat
gatcccattttatttgcaaaagtagtgcgccttggaaaagcatttatgaaagagtttcag
tctgatggaagcaaacaggaagataaagagaaaatggaaacactgttcagctgtttgttg
agtattactgatcaagtcttgcttccatctctttccttgatggactgcaatgcatgcatg
tctgaggaattatggggaatgttcaaaacctttccataccagtaccggtaccgtctctat
gggcaatggaagaatgaaacatacaatagtcacccactgcttgttaaagttaaagctcaa
accatagatcgagccaaatacatcatgaagcgtttaactaaggaaaatgtgaaaccctct
ggaaggcaaattgggaagctcagccacagcaatcctacaattttatttgattatatttta
tcacaaatacaaaaatatgataacttgataactccggttgttgattcgctgaaatacctc
acttccctgaactatgatgtcttggcatattgtataattgaagcattggcaaaccctgag
aaggagagaatgaagcatgatgacactacaatctcaagctggctgcagagtctggcaagc
ttttgtggtgccgttttccgaaaatacccaattgaacttgcaggcctcctgcagtatgta
gccaaccagctgaaggctggcaaaagctttgatttgcttattttaaaagaggtagtgcag
aaaatggcagggatagaaattactgaagaaatgacgatggaacagttggaagccatgact
ggtggagaacaactgaaagctgagggtggatactttggccaaatcaggaatacaaagaaa
tcatctcagagattaaaagatgcattattggaccatgatcttgccctccctctgtgcctg
cttatggctcaacagagaaatggtgtcgtctttcaagaaggaggggaaaaacatctgaag
ctggtgggaaaactgtatgatcagtgccatgacaccctggtacaatttggtgggttttta
gcatccaatctaagcacagaggattacataaagcgagtgccttctattgatgttctctgt
aatgagtttcacacacctcatgatgctgcatttttcctctcaagacccatgtatgcacac
cacatttcatcaaagtatgatgaactaaaaaaagctgagaagggaaataaacagcagcac
aaagttcacaaatacattacatcatgtgagttggtgatggctcctgttcacgaagctgtg
atttctctgcacctccctaaagtctgggatgacatcagccctcagttttatgctacattc
tggtctctaacaatgtatgaccttgctgtgccacacagcagctatgaccgagaagtcaat
aaacttaaagtccagatgaaagccatagatgacaatcaggaaatgcctccaaataaaaag
aaaaaagaaaaagaacgttgcacagctctgcaggacaagctccttgaagaggagaagaag
cagttggagcatgtgcagagggttctacagagactgaaactagagaaagataactggctt
ctggcaaaatctaccaaaaatgagactatcaccaaatttttacagttgtgtatatttcct
cgctgcattttttcggccattgatgcagtttactgtgctcacttcgttgaactggtgcat
cagcagaaaacacccaatttctccacacttctctgctatgaccgagttttctctgatatt
atatatacggttgcaagttgcacagaaaatgaagccagtagatatggcaggttcttatgc
tgtatgctggagactgtgaccagatggcacagtgacagagtcatatatgaaaaggaatgt
ggcaactatccaggtttcctaactatattgcgagcaactggatttgatggtggaaataag
gctgatcaactggattatgagaattttagacacgtggtacacaaatggcactataaatta
actaaggcttctgtgcactgtctggaaacaggtgaatatacacatattagaaacatcctg
attgtgctgaccaaaatccttccatggtatccaaaagtgctgaacctgggtcaagccttg
gaaagaagagtacacaagatatgtcaggaagagaaagagaagagacctgatctatatgca
ttggctatgggctattctggacagttgaaaagtaggaagcctttcatgatacctgaaaat
gaatttcaccacaaagacccacctgccaggaatgctgtacctgcaacagtacaaaatggg
ccaggtggtgctgggatgcctacgtctctcacaataaatacagttagactggaggagggc
actactgaggagactgcagataaactaaaggagaagtctcagggtgtggtgaaagttatt
aataaaactgtcaacgctacaccaaaggtgacaacaagcaatggaaacagtgcatctaat
agcaaaattattaaagagaaagatgataaagaaaaaagcgggaaggaaaaagataaagaa
aaaaaagacaagactccagctgccactccggagatgaaggcacttgggaaagatgggaaa
gataaaccgaaggaagaacgggctaacaaagatgagaaagcaagagagattaaggagaaa
acgccaaaatctgacaaagagaaggaaaaggtgaagaaagaagaaaaagcttcaaaagaa
gaaaagtccaagacggttgttaccatcattgagtcaaagtcaactgcagaaaaggagaga
gaaaaggagccgtccagagaaagagatctagcaaaggaaatgaaatccaaggaaaatgct
aaaggaggagaaaaggtgccagtagctgggtccttgaagtcacctgttccccgatcagaa
acatcagaatctgaaagggaacaaaaacgccgcaaagttgatacacattcttctccgtca
cattcctcaacagtaaaggacaacctcaacgaactcaaggactcttcagcaaagcactac
ataaaccacactactccaacactgtccaagagtaaggagagagaagtggagaagaaagat
ttggacaagtcaagggaaagatccagagagagagagaagaaagatgaaaaggacaggaaa
gatcgaaaaagggatcattcaaacagtgaccgagaggtaccacaggattcaactaaacga
cgcaaagaggaaaatggcacaactggttcttcaaaacatagcaaaagtgaaagtccttct
gattcccctcgcttaaatgaaaaagagaaggagaaaaacaaatcaaaatcttcaggaaaa
gagaaaggtgattcaatcaaggcagaaaagatggagaagagctcctctggtagcaaaaag
gaatcaagacatgataaagaaaaagcagagaagaaagaaaagcgggacagtactgggggg
aaagaagaaaagaaacatcataaatcttcagacaagcatagataa
DBGET
integrated database retrieval system
