Vidua chalybeata (village indigobird): 128795158
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Entry
128795158 CDS
T11587
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1-like isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
vcha Vidua chalybeata (village indigobird)
Pathway
vcha03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vcha00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
128795158
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcha03019
]
128795158
Messenger RNA biogenesis [BR:
vcha03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
128795158
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Fip1
TSX
Motif
Other DBs
NCBI-GeneID:
128795158
NCBI-ProteinID:
XP_053811682
LinkDB
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Position
14:complement(3147568..3169570)
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AA seq
571 aa
AA seq
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MATELEPPAAGAVSGAAPLEAEEDEEHWLYGDDTTGKQEDGPISGHTESAHPLQDAPQDN
RPVNNEDREMSQHVCVPLSTALPSGEDDEDDSDSDSDDDDVKVTIGNIKTGAPSYMGTPM
NLNLKTGRGYGASASAKLQPKGIDLDAAGNINGLPVIEVDLDSFEDKPWRKPGADLSDYF
NYGFNEETWKAYCEKQRRLQLGLDPAPPISTENKITVQQGRTGNAEKEVESNIIKTEFKT
DFLALVGGRMKAGPPPNRKLGGTIDVIGGQAGTIRRVEGRRRDKHASEENPIQVLGDHGS
KPQPPQQPQQPSQPQQPPQQQPFAPPAGPPPPPLAGPPPPHFLHPPPPVTSVPPPLHPPG
LPPPGPIPGLFPPPLAPPPALLIPTLDGQPASYNNRQPPPFGYNSADSGFISYPPISTSH
TPWVTTVDKGTSSSSSSHWEYSGSRRDRERERDRDRDRERDRDRDRTPTTSEYNNDDERY
RYYSRERSYDFERDYRRSRDRSREREERHRERRHRDKDDGSKHKSSRRKQHESEEGESHR
RHKHKKNKRSKEEKEASEDGAQEGEEQDTKE
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atggccaccgagctggagccgccggccgccggcgccgtgtcgggcgcggcgccgctggag
gcggaggaggacgaggagcactggctgtacggggatgacaccactggtaagcaagaagat
ggaccaatttctggacacacagaatctgctcaccctctgcaggatgctccccaggacaac
cggcccgtcaacaacgaggacagagagatgtcccagcacgtatgtgtcccactgtccacg
gcccttcccagtggtgaggatgatgaggatgacagtgacagtgacagcgatgacgatgat
gtgaaggtcacaattggcaacatcaaaacaggagcgccgtcctacatgggaactcctatg
aatctaaacttaaaaacgggtagaggctatggagcatcagcttcagccaagttgcagccc
aaaggtattgacttggatgccgcagggaatataaatggattgcctgtgatagaagtggat
ttggattcatttgaagacaaaccatggagaaaaccaggtgctgatctttctgattacttt
aattatggattcaatgaagaaacatggaaagcttattgtgaaaagcagcggcggcttcag
ctggggctggaccctgctcctcccatcagcactgagaacaagatcacggttcagcaggga
agaacaggaaatgctgaaaaagaagtggaaagcaacatcatcaaaacagagttcaaaaca
gacttcttggctctggtgggaggacgaatgaaggctgggcctcctcccaacaggaagctg
ggtgggaccattgatgtgatcgggggccaggcaggcacaatccgcagggtggaagggaga
cgccgggataaacacgcctcggaggaaaaccccatccaggtcctgggagaccatggcagc
aagccccagcctccccagcagccccagcagccctcccagccccagcagcctcctcagcag
cagccgttcgctccaccagcggggcctccgcctcccccgctcgctgggcctcctcctcca
cacttcctgcaccctcctcctccagtgacttctgttccacctcccctgcatcctccaggc
ctgccacctccaggtccaattccaggattgttcccaccacctctggcaccaccaccagct
ctcctcatcccaaccttggatgggcagccagccagctacaacaacaggcagccacctccc
tttggctacaactctgcagattcaggtttcatcagctacccccccatctccacgtcccac
acgccctgggtgaccacggtggacaagggcacgagcagctccagcagcagccactgggag
tactcgggctccaggcgggacagggagcgcgagcgagaccgggaccgggacagggagcga
gaccgggaccgggaccgcaccccgaccaccagtgaatacaacaatgacgacgagcggtac
cgctactacagccgcgagcgcagctacgacttcgagcgcgattaccggcgcagccgtgac
cgcagccgcgagcgcgaggagcggcaccgcgagcgccgccaccgcgacaaggacgacggc
agcaaacacaaatcctcccgcaggaagcagcacgagagcgaggagggcgagagccaccgg
cgccacaagcacaaaaagaacaagcggagcaaggaggagaaggaggccagcgaggatggt
gcccaggagggcgaggagcaggacaccaaggagtga
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