Vidua chalybeata (village indigobird): 128796217
Help
Entry
128796217 CDS
T11587
Symbol
CIITA
Name
(RefSeq) MHC class II transactivator
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
vcha Vidua chalybeata (village indigobird)
Pathway
vcha05164
Influenza A
Brite
KEGG Orthology (KO) [BR:
vcha00001
]
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
128796217 (CIITA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
vcha01001
]
128796217 (CIITA)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
vcha04054
]
128796217 (CIITA)
Enzymes [BR:
vcha01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
128796217 (CIITA)
Protein kinases [BR:
vcha01001
]
Serine/threonine kinases: Other
TAF1 family
128796217 (CIITA)
Pattern recognition receptors [BR:
vcha04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
128796217 (CIITA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NACHT
LRR_NLRC3
LRR_4
LRR_6
LRR_TMOD-LMOD
NLRC4_HD2
LRR_CARMIL
LRR_8
LRR_14
LRR_9
NB-ARC
LRR_MHP1-HER1-GIP3
PRAME_C
nSTAND_NTPase5
RsgA_GTPase
NPHP3_N
Reo_sigmaC_M
AAA_19
nSTAND3
nSTAND6
Motif
Other DBs
NCBI-GeneID:
128796217
NCBI-ProteinID:
XP_053813651
LinkDB
All DBs
Position
16:6199399..6235261
Genome browser
AA seq
1146 aa
AA seq
DB search
MIPQSQCSYSNSTTPGMEVRTKRQTMDSVVVPENGYLDLLHSDIDPLHLCTFFDPKSSGD
EEGDFSTDLEVEASNYEQLNNVDFPYENGDGFYPCCNTTDAYAKIAELVEYVLKDQQEKQ
VEDIFAGNLILDDIAAENTEKFPDIKIQSCLKRTFLGSAAESYCDASEPKYKKIVEVPAA
SAGNGSFFAMPLNSHPVSCTSLTNQHMSCSVPAAHGLERSLIIPGLSEPLTTECQPVCVK
GYQENLGLAGPPQQIFNFVLENGTSDVIVYPVLTSPMETFMSPSFPVNLCAQHTYVTSPG
IPDVAADKLAHLEKFQEVQDSIIPSEEPFKRPEQVETFCSSLKDYFRDTCKSVSMEREVN
LDHLFIDGTLVQSQTETKTGKNSAKAMEKELVTCSLQETAIDRSQIFQIPQRKDLETKVI
VVLGKAGMGKSILIQKICQDWSNGEFSQFEFVFWFDCKQISLPEKQYSLKELLLEFFVKP
QEGSKEIFEYMLQNPDKVLLIFDGFKGLHDHENFPRCSASQPEKDLFSIKELLSGLIQKK
ILNGCTLLFTARPKDKLYQYVSKVDKTIEIVGFSPQQRELYITKYFEESLYCDSALKLIK
ECEYLFSHCYSPVMCRFVCFLCETVLEMGEKSLPSTLTEVFLKFFQQKIMFMQTDVTTTQ
NQESLATLARVAWCLGEKHQSAMKSDLIPSKEVKEFALKYGFFLPFAFPRYSDSEEEEFG
STFSDFVIQNFLCALHLLLAEELKDKNLTKYLSFLSKKKKPYNWLDLMPRFLAGLVFLQD
DPYFCSLSNEDEKQSTKKQKTFLKYIRRLQINTLCPERLLELLCCVYETQNNYLLQHVAL
RLEPELSFLGIVLTPPDVHVLHSILKRSRKEFSLDVRNSSIDMQGLQALVSLRNVTSFRA
SLSDTVRLWKSLEQTKDYELLKASTEKFVLDPFKAKTVKDISDLSDLVEMQEKMMNCVQE
ASGCISYEIPAIRNLRKLEFALGPACGLEGLLKLVKILAAFPSLQHLDLDALSENGIGDE
GAKSLSEVFPTLTSLETLNLSQNKITDLGAENLATALPSLSSLKTLSLYNNNICDFGAEN
LAKVLPAMTSLRVLDVQYNKITGVGAQQLTDSLRKCPHMKSLVMWNPTIPYGVLEHLHQL
DSRISV
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
atgataccacaatcacagtgcagttacagtaacagcacaactcctggaatggaggtcagg
acaaagagacaaaccatggattcagtagttgtgcctgaaaatggctaccttgatttactg
cacagtgatattgatccattgcatctgtgtactttctttgatcctaagtcatctggagat
gaagaaggtgacttctctacagatcttgaagttgaggccagcaactatgaacagttaaat
aatgtagatttcccatatgaaaatggagatgggttctacccctgttgcaacaccacggat
gcttatgctaaaatagctgaattagtagaatatgtgctcaaggatcagcaggagaagcag
gttgaagacatttttgcagggaaccttattttggatgacattgctgctgaaaacactgag
aaatttcctgacataaagatccagtcgtgtcttaaacgaactttcttaggctctgcagca
gagagttactgtgatgcttcagaacccaaatataagaaaattgtggaagtccctgcagct
tctgcagggaatggcagtttctttgctatgcctctcaacagccacccagtgagctgcacc
tctctaactaaccagcacatgtcctgttctgttcctgctgcccatgggctggaaagaagc
ctcataattcctggattgtcagaacctttgaccacagagtgccagccagtctgtgtgaaa
gggtaccaagagaatctaggcttggcaggtcctcctcagcagatatttaactttgttctt
gaaaatggcacatctgatgttatagtatatccagtgctgacatctcccatggaaacattc
atgtctccaagttttccagttaatttatgtgcccaacatacgtatgtcacaagccccgga
attccagatgtagcagcagacaaattagcacatttagagaaatttcaagaagttcaagat
tctataattccttctgaagaacctttcaaaagaccagagcaagtggaaactttctgttca
tcccttaaggattatttccgagacacctgcaaatctgtgagcatggagcgggaagtaaat
ctggatcacctgttcattgatgggacacttgttcaaagtcaaactgaaaccaagactgga
aagaatagtgcaaaagcaatggaaaaggagctggtaacctgcagcctgcaagagacagcc
attgatagaagccaaatatttcaaatcccacagcgtaaagacttagagactaaagtgata
gtggtgctgggaaaagcaggaatgggcaaaagcattctcattcagaagatctgccaggac
tggtccaatggagagttttctcagtttgaatttgtattttggtttgactgcaaacaaata
agtttgcctgagaagcaatacagcctgaaggagctgctgcttgagttttttgtaaaaccg
caagagggaagcaaagagatctttgagtatatgttgcaaaatcctgataaagtccttctg
atttttgatggttttaaaggattgcacgatcatgagaattttcctcgttgctcagccagc
cagcctgaaaaggatttgttcagtataaaggagctgctctcaggactcatccaaaaaaag
atactcaatggctgtactttattatttacagcaagaccaaaagacaaactgtaccagtac
gtgtccaaagtggataagactattgaaattgtaggattttcccctcagcagagagaattg
tacataaccaaatactttgaagaatcactctattgtgatagtgcactgaaattaatcaaa
gagtgtgagtacttgttcagtcattgttacagtcctgttatgtgtagatttgtttgtttt
ctctgtgagacggtgcttgaaatgggagagaaaagtcttccttcaactcttactgaagtc
ttcctgaaattttttcagcagaagatcatgtttatgcaaacagatgttacaaccacacaa
aatcaagagagtcttgctaccctagctcgtgtagcctggtgtcttggagaaaagcaccaa
agtgccatgaaaagtgatcttattccttctaaggaagttaaagagtttgctctgaagtat
gggtttttcctgccatttgcattccccagatattcagatagtgaagaagaggaatttggg
agcacattctctgattttgtcattcagaatttcttgtgtgcacttcaccttttgttagca
gaagagctcaaggataaaaatctaacaaagtacttgtcttttctatccaagaagaaaaaa
ccttataactggttagatttaatgcctcgatttttggctggtttggtgtttctccaggat
gacccctacttctgctctctttcaaatgaggatgaaaagcagtcaaccaagaagcagaag
acattcttgaaatacattagaaggctgcagattaatactctctgcccagagaggttgctg
gagcttttatgttgtgtttatgaaacacagaataattatcttctgcaacatgtggccttg
agactcgagccagagttgtcttttctgggcatagttcttacaccacctgatgtccatgta
ctgcactctattttgaaaaggtcaagaaaagagttttccttggatgtgcggaacagcagc
attgacatgcaagggctgcaagccttggtcagcctaaggaatgtgacatcgttcagggct
tccctcagtgacacagtcaggctctggaagtctttagaacagacaaaagactacgaactg
ctgaaagcatccacagagaaatttgttcttgatccctttaaggcaaagacagtgaaggac
atcagtgacctctccgaccttgtagagatgcaggagaagatgatgaattgtgtgcaagaa
gcatctggttgcatcagctatgaaattcctgccatcagaaacctcagaaaactcgaattt
gcgctgggtccagcatgtggccttgaaggattgctaaaactcgtgaaaattcttgcagca
tttccatcacttcagcatttagaccttgatgctctgagtgaaaatggcataggagatgaa
ggagcaaagagtctatctgaagtctttccaaccctgacatcactggaaacattaaattta
tcacagaataaaataacagacctgggtgcagagaaccttgctacagctctcccttccttg
tcttccttaaaaacactaagcttgtacaataacaacatttgtgattttggagcagaaaat
ctggcaaaggttcttcctgcaatgacatctttaagagtgctagatgttcagtataacaaa
ataactggtgttggagcccagcagctgactgacagcctacgaaaatgtccccatatgaag
agcttggtgatgtggaatcccaccattccctatggagttcttgaacaccttcaccagctg
gactccaggatcagtgtgtag
DBGET
integrated database retrieval system
