Vidua chalybeata (village indigobird): 128797772
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Entry
128797772 CDS
T11587
Symbol
ALYREF
Name
(RefSeq) THO complex subunit 4
KO
K12881
THO complex subunit 4
Organism
vcha Vidua chalybeata (village indigobird)
Pathway
vcha03013
Nucleocytoplasmic transport
vcha03015
mRNA surveillance pathway
vcha03040
Spliceosome
vcha05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
vcha00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128797772 (ALYREF)
09122 Translation
03013 Nucleocytoplasmic transport
128797772 (ALYREF)
03015 mRNA surveillance pathway
128797772 (ALYREF)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
128797772 (ALYREF)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcha03019
]
128797772 (ALYREF)
03041 Spliceosome [BR:
vcha03041
]
128797772 (ALYREF)
Messenger RNA biogenesis [BR:
vcha03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
128797772 (ALYREF)
TREX complex
128797772 (ALYREF)
Spliceosome [BR:
vcha03041
]
Complex C
Other components
EJC/TREX
128797772 (ALYREF)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
128797772 (ALYREF)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
F07F6_N
Motif
Other DBs
NCBI-GeneID:
128797772
NCBI-ProteinID:
XP_053816611
LinkDB
All DBs
Position
19:6548188..6552215
Genome browser
AA seq
254 aa
AA seq
DB search
MADKMDMSLDDIIKLNRSQRGASRGGRGGRGRGGTARGGGPGRGGVGGGRAGGGPVRNRP
VMARGGGRNRPAPYSRPKQLPEKWQHDLFDSGFGAGAGVETGGKLLVSNLDFGVSDADIQ
ELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTS
QIDTQRRPAQSVNRGGMTRNRGVSGGFGGGGNRRGTRGGNRGRGRGAGRTSKQQLSAEEL
DAQLDAYNARMDTS
NT seq
765 nt
NT seq
+upstream
nt +downstream
nt
atggccgacaagatggacatgtccctggacgacatcattaagctcaaccggagccagcgt
ggggccagccggggcggccggggtggccggggccggggcggcaccgcacgcgggggcggg
cccggccggggcggcgttggcggcgggcgcgcgggcggcggccccgtgcggaaccggccg
gtgatggcccggggcggcggcaggaaccggcccgcgccctacagccggcccaagcaactc
cccgagaaatggcagcacgacctgttcgacagcggcttcggggcgggggccggcgtggag
accggcggaaagctgctcgtctccaacctggacttcggcgtttcggatgcggacatccag
gagctctttgcggagttcgggaccttgaagaaggcagctgtgcactatgacagatccggc
cgcagcctcggaacggcagacgtgcatttcgagaggaaggctgacgcgctgaaggccatg
aagcagtacaacggggtgcccctggacgggcgccccatgaacatccagctggtcacgtca
cagatcgacacgcagcggagaccagcacagagtgtaaacagaggaggcatgaccaggaac
cgcggggtctcggggggatttggaggtggaggcaacaggcgagggactcgtggcgggaac
agagggagaggcagaggagctggaagaacttccaaacagcagctctctgcagaagaacta
gatgcacagctggatgcttacaatgccaggatggacaccagctaa
DBGET
integrated database retrieval system
