Vidua chalybeata (village indigobird): 128797945
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Entry
128797945 CDS
T11587
Symbol
SMG8
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG8
KO
K18734
protein SMG8
Organism
vcha Vidua chalybeata (village indigobird)
Brite
KEGG Orthology (KO) [BR:
vcha00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcha03019
]
128797945 (SMG8)
Messenger RNA biogenesis [BR:
vcha03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
128797945 (SMG8)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg8_Smg9
Motif
Other DBs
NCBI-GeneID:
128797945
NCBI-ProteinID:
XP_053816893
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All DBs
Position
20:8637952..8643736
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AA seq
965 aa
AA seq
DB search
MPPPGAGPPGAMGTAVGPMSLRELLLAAEAGGAAGGEEEVCVVGIFGKTALQLCSEKEAL
VSTVCDRQVFPLFPEEDPELADGAAGREGDPATKDYNQLQAYYSQESRVLYLVLTSICDT
PQLLRACGDLAAAENREAGPGHPSGGPAPLPHAEAHEFWKHQEKLHCLSLLYLFSVCHIL
LLVHPTCSFDITYDRVFRALDGLRQKVLPSLKAAIKDCPVGKEWKLNCRPCPPRLLFLFQ
LNGALKVDPLPSRGQDPCGHLEKPPPKKHSPKRRLQHALEDQIYRIFRKSRVLTNQSINC
LFTVPANQAFVYIVAGGPQDGDDPVAMLLDQLRSNCTMRETDSLLAPTLSGPRRYQMMRH
GRQQLSFHAESSSSSSSGQLVDCTLKEFLWQHVELVLSKKGFEDSVGRNPQPSHFELPTY
QKWVAAALKLYEVTIEGKDDDPTCGELSSKIMSSIKVLEGYLDIDTKFSENRCQKALPMA
HSAYQSNLPHNYTMTVHKNQLAQALRVYSQHARGPAFHKYAMQLNEDCYKFWSNGHQLCE
ERSLTDQHCVHKFHLLPKAGEKPEADRNPPILYHNSRARSTGACNCGRKQAPREDPFDIK
AANYDFYQLLEEKCCGKLEHINFPIFQPSTPDPAPARDEASPAPPEGEMEKLKEKEPQTQ
GESTGLSLALSLGQSTGSLGTYPPDAQGGGDNAESHGQSGDSKSEKRPSLVDRQASTVEY
LPGMLHSNCPKGLLPKFSSWSLVKLGPAKAYNFHTGLDQQGFIPGTNYLMPWDIVIRTRT
EDEGDLDTNSWPAPNKAVPGKRSAVVMGRGRRRDDIARAFVGFEYEDARGRRFMCSGPDK
VMKVMGGGPKESALKALNSDMPLYILSSTQGRGLKPHYAQFMRLFVVVPDAPLQITLTPQ
VQPGPPPCPIFYPEKQEITLPSDGLWVLRFPYAYVTERGPCFPPKESQQLMSYKVLRGIL
KAITQ
NT seq
2898 nt
NT seq
+upstream
nt +downstream
nt
atgccgccgcccggggccgggccgcccggggccatgggcacggccgtggggcccatgagc
ctgcgggagctgctgctggcggccgaggcgggcggcgcggcgggcggcgaggaggaggtg
tgcgtggtgggcatcttcggcaaaaccgcgctgcagctctgctccgagaaggaggccctg
gtgagcaccgtgtgcgaccggcaggtgttcccgctgttcccggaggaggatcccgagctg
gcggatggcgccgcggggcgggagggggacccggccaccaaggactacaaccagctgcag
gcgtactacagccaggagagccgcgtgctgtacctggtgctcacctccatctgcgacacg
ccgcagctgctgcgcgcctgcggagacctggcggcggccgagaacagagaggccgggccc
ggccacccctccggaggcccggccccgcttccccacgccgaggcgcacgagttctggaag
caccaggagaagctgcactgcctgagcctcctctacctcttctccgtgtgccacatcctg
ctgctggtgcatcccacctgctccttcgacatcacctacgaccgcgtgttcagggcgctg
gacgggctgcggcagaaggtgctgccctccctgaaggctgccatcaaggactgccctgtc
ggtaaggagtggaagctcaactgcaggccatgccctccacgcctcctcttcctcttccag
ctcaacggggctctgaaggtggatccgctgccaagcaggggccaggatccctgtggtcac
ctggaaaagccaccccccaagaagcattcccccaagaggaggctgcagcacgctctggag
gatcagatctaccgcatcttccgcaagagccgggtgctgaccaaccagagcatcaactgc
ctgttcaccgtgcccgccaaccaggctttcgtgtacatcgtggctggtgggccccaggac
ggagacgaccccgtggccatgcttctcgaccagctcaggagcaactgcaccatgagagag
actgactcgctgctggctcccaccctgtcgggacccaggaggtatcagatgatgaggcac
ggccggcagcagctctccttccacgcagagagtagcagctccagctcctctgggcagctc
gtggactgcaccctcaaggagttcttgtggcagcacgtggagttggtgctcagcaagaag
ggctttgaagacagcgtggggaggaacccgcagccctctcacttcgagctcccgacctac
cagaagtgggtggctgcagctctaaaactctatgaagtgaccatcgaaggcaaagacgat
gacccaacctgtggcgagctgagctcaaaaatcatgagcagcatcaaagttttggaaggc
tacttagacatagacaccaagttctccgaaaaccgttgccagaaggctttgcccatggcc
cacagcgcctaccagtccaacctgccccacaattacaccatgacagtgcacaagaaccag
ctggcccaggccctgcgtgtgtacagccagcacgcccggggcccagccttccacaaatac
gccatgcagctcaacgaggactgctacaagttctggagcaacgggcaccagctctgcgag
gagcggagcttgacagaccagcactgcgtgcacaagttccatctgctccccaaagcaggg
gaaaagccagaagcagacagaaatcctccaattctgtaccacaacagccgggctcgttcc
actggtgcctgtaactgtggaaggaagcaagctcctcgggaggacccctttgatatcaaa
gcagctaattatgacttttaccagctgctggaagagaaatgctgtggaaaactggagcac
atcaacttccccatatttcagccaagcacacctgacccggcgcctgctcgggacgaggca
tcgcccgcccctccggaaggcgagatggagaaactcaaagagaaagaacctcagactcag
ggagagagcacaggcctgagcttagccctgagcctgggccagtccacaggcagcctgggc
acttacccacccgatgcccagggtggaggggacaatgcagaaagccacgggcagagcggg
gactccaagagtgagaagaggccgagcctggtggatcgccaggcttccactgtcgagtac
ctccccgggatgctccattccaactgccccaaaggccttctgcccaaattctccagttgg
tcactggtcaagctggggcctgctaaggcttataacttccacactggcttagatcaacag
ggctttatcccgggaacaaactatttaatgccttgggacattgtcatcaggacgagaact
gaagatgaaggagacttagacaccaattcctggcctgcacccaacaaggctgttcctggg
aaaagaagcgcggtggtgatgggaagaggccggcggagggacgacatcgctcgggctttt
gtgggctttgaatatgaagatgcacgtgggaggaggttcatgtgctcggggcctgataag
gtgatgaaggtgatgggaggggggccgaaggaatctgccctgaaagccctcaactccgac
atgcccctgtacatcctgtcctcgacgcagggacggggcctcaagccccactacgcccag
ttcatgaggctcttcgtggtggtccccgacgctcctctgcagatcaccttaacgcctcag
gttcaaccaggaccaccaccctgtcctatattttaccctgagaagcaggaaatcaccctt
ccctctgatggactctgggtgctgaggtttccctatgcctacgtgacagaacgggggccc
tgcttccctcccaaagaaagccagcagttaatgagctacaaagttctccgaggaatactg
aaagcaattacacagtaa
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