Vidua chalybeata (village indigobird): 128798358
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Entry
128798358 CDS
T11587
Symbol
PRPF4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
vcha Vidua chalybeata (village indigobird)
Pathway
vcha03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vcha00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128798358 (PRPF4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vcha03041
]
128798358 (PRPF4)
Spliceosome [BR:
vcha03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
128798358 (PRPF4)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40_Prp19
WD40
Beta-prop_IFT122_1st
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_CDC20-Fz
WD40_Gbeta
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_WDR36-Utp21_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
DSE1_N
PRP4
ASA1
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_Aladin
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_SCAP
Beta-prop_TEP1_C
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_WDR41
Beta-prop_NOL10_N
Beta-prop_Vps41
Beta-prop_IFT140_1st
WD_LRWD1
WD40_like
Beta-prop_WDR35_TULP_N
WD40_RFWD3
Beta-prop_WDR11_1st
Motif
Other DBs
NCBI-GeneID:
128798358
NCBI-ProteinID:
XP_053817699
LinkDB
All DBs
Position
21:10055059..10063240
Genome browser
AA seq
529 aa
AA seq
DB search
MATARAPAARGVARPPEPPKAKPAEEAEAAPAKRAPIFYGSLEEKERERLAKGEAGLLAK
EGMKAAMEAGNINISSGEVFDLEDHMSERQAEVLAEFERRKRARQINVSTDDCEVKACLR
ALGEPITLFGEGPAERRERLRNILSVVGTDALKKTRKDDDRSKKSKEEYQQTWYHEGPRS
LKTARLWLANYSLPRAAKRLEEARLLKEIPEATRTSQRQELHKSLRSLNNFCSQIGDDRP
LSYCHFSPNSKLLATACWSGLCKLWSVPDCNLVHTLRGHSTNVGAIVFHPKATVSLDKKD
VSLASCAADGSVKLWNLESDEPVADIEGHSMRVARVMWHPSGRFLGTTCYDHSWRLWDLE
AQEEILHQEGHSKGVYDIAFHTDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGI
NFSPNGYHVATGSGDNTCKVWDLRQRKCIYTIPAHQNLVTGVRFEPNHGNFLLTGAYDNT
AKIWTHPGWSPLKTLAGHEGKVMGLDISLDGQLIATCSYDRTFKLWTAE
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atggccaccgcgcgggcaccggcggcgcgcggtgtggcccggccccccgagccccccaag
gccaagcctgcggaggaggccgaggctgccccggccaagcgggcgcccatcttctacggg
agcctggaggagaaggagcgggagcgcctggccaagggcgaggcggggctgctggccaag
gagggcatgaaggctgccatggaggccggcaacatcaacatcagcagcggggaggtgttt
gacctcgaggaccacatgagcgagcggcaggccgaggtgctggcggagtttgagcgccgc
aagcgcgcccggcagatcaacgtgtccacggacgactgcgaggtcaaggcctgcctgagg
gccctgggcgagcccatcacgctcttcggagagggccctgcggagcgcagggagaggtta
aggaacatcctctcggtggtcggcacagatgcgttaaaaaagaccaggaaagatgatgac
aggtccaaaaagtccaaagaagagtatcagcaaacctggtaccatgaaggcccacgcagt
ctgaaaacagccaggctgtggctggccaactattcactccccagggcagcgaagcggctg
gaggaggcccggctgctcaaggagattcctgaggccaccaggacatcccagaggcaggag
ctgcacaaatccctgcggtccttgaataacttctgcagtcagattggggacgatcgcccg
ctgtcctactgccacttcagccccaactccaaactgctggccacagcctgctggagtggg
ctgtgcaagctctggtctgtgcctgactgcaacctggttcacaccttacgaggacacagc
accaacgtgggggcaatcgtgttccaccccaaggccacggtgtccctggacaagaaggac
gtgagcctggcctcgtgtgcagctgatggctctgtcaaactctggaacttggaaagtgat
gagccggtggcagacatcgagggacacagcatgcgagtggcccgtgtgatgtggcacccc
tcagggaggttcctgggcaccacctgctacgatcactcgtggcgcctgtgggacctggag
gcgcaggaggagattctgcaccaggaggggcacagcaagggggtctacgacatcgccttc
cacaccgacggctccctcgccggcactggaggcctggatgcctttggccgggtgtgggac
ctgcgcacaggccgctgtatcatgttcctggaagggcacctgaaggagatttacgggatc
aacttctccccaaacgggtaccacgtggccacgggcagtggggacaacacctgcaaggtg
tgggacctgcggcagaggaagtgcatctacaccatccctgcccaccagaacctggtcact
ggcgtcaggtttgaacccaaccatgggaatttcctgctcacgggcgcctacgacaacacg
gccaagatctggacccaccctggctggtccccgctgaagacactggcagggcacgagggg
aaggtgatgggcctggacatctccctggatgggcagctcattgccacctgctcctacgac
agaaccttcaagctctggacagccgagtag
DBGET
integrated database retrieval system
