Vidua chalybeata (village indigobird): 128798435
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Entry
128798435 CDS
T11587
Symbol
NUP188
Name
(RefSeq) nucleoporin NUP188
KO
K14311
nuclear pore complex protein Nup188
Organism
vcha Vidua chalybeata (village indigobird)
Pathway
vcha03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
vcha00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
128798435 (NUP188)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcha03019
]
128798435 (NUP188)
Messenger RNA biogenesis [BR:
vcha03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
128798435 (NUP188)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup188_N-subdom_III
Nup188_N
Nup188_SH3-like
Motif
Other DBs
NCBI-GeneID:
128798435
NCBI-ProteinID:
XP_053817910
LinkDB
All DBs
Position
21:complement(5523892..5549206)
Genome browser
AA seq
1774 aa
AA seq
DB search
MTHIWGRDGGVACTAPRDTGVVEGGSPGSRDNGAKMAAGGLSARSSRELWTILLGRSALR
EPAQIAAELNKHWQRLLEGLSYYKPPSTTSAEKIKADKDVAAPLKELGLRVSKFLGLDEE
QSVQLLQSYLQEDYRGTRDSLKTVLQDERQSQALMLKLADYYYEERICILRCVLHLLTYF
QDERHPYTAQYFQCVEKLDKELVPNYRKQFEALYKAEAPTWETHGNLMTERQVSRWFVQC
LREQSMLLEVIFLYYAYFEMAPEELLAFAKMFKEQGFGTRQTNRHLVDESMDHLVDRIGY
FSALILVEGMEIDSLHERALDDRTEEHKLANNQHIHQEMDNQLLQLGDVSHHAPVLLAWA
LLRHTINPEESTNIIRRMGSTAIQLNVFQYLTKLLRSLSSGGKNCTASTACMCIYGLLSF
VLTSLELHTLGNQQDIIDAACEVLAASSIPQLFWKTEPTAGLGIILDSVCGMFPHLLTPL
LQLLQALVSDKSTAKKVYSFLDKMSFYIELYKHKPPDVISHEDGTLWRRQAPKLLYPLGL
GQTNLRIPQGTVGQVMLDDRAYLVRWEYSYSSWTLFTCEIEMLLHVVSTADVIQHCQRVK
PIIDLVHKVISTDVSIADCLLPITSRIYMLLQRLTTVISPPVDVIASCVNCLTVLAARVP
AKVWTDLHHTGFLPFVANPLSSMNHMISAEGMNAGGYGNLLMSMEQPQGEYSVTISFLNL
VTTLVRGQLGSTQSQGLVPCIVFVLKEMLPNYHKWRYNSHGVREKIGCLILQLIHAILNL
CPEMDPRSSNAPSLQSLCIFSLANTEAGQAVINIMGIGVDTIDMVMASQSGSDESQGQGQ
LLIQTVKLAFSVTNNVIRLKPPSSVVSPLEQALTQHGAHGNNLIAVLAKYIYHKHDPALP
RLAIQLLKRLATVAPMSVYACLGSDAAAIRDAFLTHLQSKIEDMRIKVMILEFLTVAVET
QPGLIELFLNLEVKDGSDGSKEFSLGEWSCLQVVLELIDSKQQERYWCPPLLHRAAIAFL
HALWQDRRDSAMLVLRTKPKFWENLTNPLFGTLPPPSESSELSVLDTCALIMKIICLEIY
YVVKGSLDQSLKDTLKNFSTKKRFAYWSEYVKSLAQHVAETEGSSCASVTEYQMLISAWR
MLLIISTSHADIMHLTDSAVHQELFLDVLNGTRVLLQVPMSVPCLQLGSMLCTLLLILLK
QWKSELSSVDKIINSLTQILEGVLQADQQMMEKTKAKVFSALITVLQMKEMKVNDIPQYP
QLVLSVCETLQDEVIALLDQTRHSLTLGDAADDKDKDSMETDDASRVKHKDQRDGVCVLG
LHLAKELCEVDEDGDYWLQITRKVPVLPTIFAALEISLRVKQNLHFTEASLHLLLTLART
QQGAAAMAGAGVTQSVCLPLLSVYQLSTNGAIQTSASSRKSLDAPSWPGVYRLSMSLMER
LLKTLRYNFLTEALDFVGVHQERILQCLNAVRTVQSLACLEEADHTVGFILQLSNFTKEW
HFHLPQLMGDMQVNLCYLCQACTSLLHSRKMLQHYLQTKNGDSLPSSVTPRVQRNPQASS
KHPSPESEAAEQKALLTVQYSLLKILSKSLAALRHFTPDVCQILLDQSLDLAEYNVLFVL
SFTTPAFDSDVAPSFGTLLATVNVALNMLGEMDKKKEPFPQAAGLNMQEGTKTLKSLLMF
TMENCFYLLISQAVRYLRDPAVHPRDKQRMKQELSSELSTLLSSLSRYFRRGGPSSPASG
VLPSPQGKSASKLGPEGQEPLFQLVQAFVRHVQR
NT seq
5325 nt
NT seq
+upstream
nt +downstream
nt
atgacccacatatgggggcgtgacgggggcgtggcttgtacggcaccacgtgacaccggc
gtggtggagggaggcagccccgggtcacgtgacaacggagcgaagatggcggcgggcggg
ctgagcgcgaggagcagcagagaattatggacaattctgctgggcagatcagctttaaga
gaaccagctcagattgctgcagagttgaacaagcactggcagaggctgttagagggactg
tcatactacaaaccaccgagtacaacttcagcagaaaaaattaaagctgataaagatgta
gctgctccactaaaagagttgggtctgagagtcagcaagtttttgggtctggatgaagag
cagagtgtgcagttattacaatcttatcttcaggaggattacagaggaacaagagactcc
ctgaagacagttcttcaggacgaaaggcagagtcaggctctgatgctgaagcttgctgac
tactactatgaggagaggatctgcatcctgcgctgcgtcctccacctgctcacctatttc
caggatgagagacacccttacacagcacagtacttccagtgtgttgaaaagttggacaag
gagctcgttccgaattatcgcaaacagtttgaagcgctgtacaaagcagaagctcctaca
tgggaaacacatggaaatctcatgacagaacgtcaggtttcccggtggtttgtgcagtgc
cttagggaacagtccatgctcctggaagtcatcttcctctactatgcatactttgaaatg
gcacctgaggagctcctggcatttgcaaagatgttcaaggagcagggatttggcacaaga
caaaccaacagacatttagtagatgagagcatggatcacctcgtggatcgtattggctac
tttagtgctcttattctggtggaaggcatggaaattgactccctgcatgagcgtgctttg
gatgacaggacagaggaacacaagttggccaacaatcagcacatccaccaggagatggac
aatcagctgctgcagttaggggatgtctcgcatcatgctccggtgcttttggcctgggct
ctgctccgtcacaccataaacccagaggagtccacaaacatcatcaggaggatgggcagc
actgctatccagctgaatgtcttccagtatctgacaaagctgctgcggtccctcagcagt
gggggcaagaattgtactgccagcacagcttgtatgtgtatttatggacttctttccttt
gtcctgacatcactggaattacatacattgggcaatcagcaggatataattgatgctgca
tgtgaagttctggcagcttccagcattcctcagctcttctggaagacggaacctactgca
ggtctgggtattatcctagacagtgtttgtggaatgttcccccatcttctcactcctctc
cttcagctgctccaagcccttgtgtctgataaatccactgcaaaaaaggtatacagtttc
ctggataaaatgtccttctatattgaactgtacaagcacaaacctccagatgtgatctcc
catgaggacggcacactgtggcgaagacaggctccaaagctcctctatcctcttggacta
ggtcaaacaaatctacggatacctcagggaacagtgggccaagtgatgctggatgatcgg
gcttatttggtacggtgggagtattcctacagcagctggactctgttcacctgtgagatt
gagatgctgctccatgttgtgtcaacagcagacgtgattcagcattgccagagggtcaag
cccataattgatctggttcataaagtcatcagcactgatgtgtcaatagcagattgtctt
ctgccaatcacatcacgaatctacatgctcctgcagaggctaacaactgtaatctctccc
cctgtggatgttattgcttcttgtgtcaattgcttgacagtcctggctgctcgggtgcca
gccaaggtttggacagaccttcaccacacggggttcttgccatttgttgccaatccactg
tccagtatgaatcacatgattagtgcagagggaatgaatgctgggggctatggaaacctc
ttgatgagcatggaacagccccaaggcgagtacagtgttaccatctccttcctgaacctg
gtaacaactcttgtccggggacaacttggtagcacccagagccaaggcctggtgccctgc
atcgtgtttgttctgaaggaaatgttaccaaattaccacaaatggagatacaactctcac
ggagtgagagagaaaattgggtgcctaattctgcagctgatccatgctatactgaactta
tgccctgaaatggatcctcgcagcagcaatgcccccagcctgcagtccttgtgcatcttc
agcctggccaacacggaggcagggcaagctgtcattaacatcatgggaattggggtggac
accattgacatggtaatggcctcccagtccggcagtgatgagtcccaaggccaaggccag
ctgctgatccagacagttaagctggcgttctccgttaccaacaacgtcatccggctgaag
cccccgtccagcgtggtgtctcccctggagcaggcacttactcagcatggtgctcatggg
aacaaccttattgctgtcttggccaaatacatttaccacaagcatgaccctgcacttcca
cgcctggccattcagctgctcaaacgactggctacagttgctcccatgtctgtgtatgcc
tgcctgggcagtgatgctgctgccatccgcgacgccttcctcacccacctgcagagcaag
atcgaggacatgcgcatcaaggtcatgatcctggagttcctcacagttgcagtggagaca
caacctgggctcattgagctgttcctgaacttggaagtgaaggatggcagtgatgggtca
aaggaattcagcttgggggagtggagttgcctccaagtggtgttagagctgattgactcc
aaacagcaggagaggtactggtgccctcccctcctgcaccgtgctgccatcgccttcctg
cacgcgctgtggcaggaccgtcgtgacagcgccatgctcgtgctgaggacaaagccaaag
ttttgggaaaatttaactaatcccctctttgggacccttcctccgccttctgaatcatca
gagctcagtgtcctggatacttgtgccttaataatgaaaatcatctgcttggagatctac
tatgttgtcaagggctcactggatcagtccctgaaagacacgctgaagaatttctccacc
aaaaagcgctttgcctactggtcagagtacgtgaaatccctggcacagcacgtggcagag
accgagggcagcagctgtgcctctgtcaccgagtatcaaatgctcatctcagcctggcgg
atgctgctcatcatctccacaagccatgctgatatcatgcatctgactgattctgcagtt
catcaggagttgtttctggatgtgctaaatggcaccagggttttgctccaggttcccatg
tcagtgccctgtctgcagctgggctctatgctgtgtacccttcttctgatcctgctcaag
cagtggaaaagcgagttgagttctgtggataaaatcataaactccttgacgcagattctg
gagggagtactacaggcagatcagcagatgatggagaaaaccaaagccaaagtgttctca
gctcttatcactgttctgcaaatgaaggagatgaaagtgaatgacatcccccagtacccc
cagctggtgctgagtgtgtgtgagacactccaggatgaggtcattgctcttctggaccag
actcggcacagcctgaccttgggagatgctgcagatgacaaggacaaggacagcatggag
actgacgatgcctcccgagtaaagcacaaggaccagcgagacggggtgtgtgttctgggt
ctgcacctggctaaggagctctgtgaagtggatgaagatggagactactggctgcagatt
actaggaaagtccctgtgcttcctaccatctttgctgcactggagatcagcctgagagtt
aaacaaaaccttcacttcacagaggcctcgttacacttgctgctcaccttagcaaggact
cagcagggagcagcagcaatggctggagctggtgtcacccagagtgtctgcctgcccctc
ctgagcgtgtaccagctcagcacaaatggagccattcagacatctgcttcatcccggaag
tccctggatgccccctcctggcccggggtctatcgcctctccatgtccctgatggaacgt
cttctcaaaacactgagatacaacttcctgacagaagcactggacttcgtgggtgtccat
caagagaggatccttcagtgcctgaatgcagtacggaccgtgcagagcttggcctgtctg
gaagaggctgatcacactgttggcttcattcttcagctctcaaatttcacaaaagagtgg
catttccacctgccacagcttatgggggacatgcaggtgaatctgtgttacctgtgccag
gcctgtacctccctcctgcacagccgtaaaatgctccagcactacctgcagacaaaaaac
ggcgattcccttccatcgagcgtgactccccgagtgcagcgtaatcctcaggcctcctcc
aaacaccccagccccgagtcagaggcagcagagcagaaggccctgctcacagtgcagtac
agcctcctcaaaatcctcagcaagtctctcgctgccctgcgccatttcacccctgatgtc
tgccagatcctccttgaccagtcactggaccttgctgagtacaatgtgctctttgtcttg
agtttcaccacaccagcctttgattcggatgttgcaccttcctttgggaccctccttgcc
acagtcaacgtggccctgaacatgctgggagagatggataagaagaaagaacctttccct
caggctgcagggctgaatatgcaagagggaaccaaaaccctcaagtctctgctcatgttt
acaatggagaactgtttctacctgctcatctcccaggctgttcggtacctgcgggacccg
gccgtgcacccccgggacaagcagcggatgaagcaggagctcagctcagagctgagtaca
ctgctctccagcctgtcccgttacttccgccggggtggtccctcttcacctgccagcggg
gtccttccctctccccaaggaaagtctgcctccaagctgggtccagaggggcaggagccc
ttgtttcagctggtgcaggcctttgtccggcacgtgcagagatag
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integrated database retrieval system
