Vidua chalybeata (village indigobird): 128800100
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Entry
128800100 CDS
T11587
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
vcha
Vidua chalybeata (village indigobird)
Pathway
vcha03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vcha00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128800100 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vcha03041
]
128800100 (DDX42)
Enzymes [BR:
vcha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
128800100 (DDX42)
Spliceosome [BR:
vcha03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
128800100 (DDX42)
Complex B
128800100 (DDX42)
Complex C
U2 SnRNP specific factors
128800100 (DDX42)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SBSN_GxHH_rpt
Cas3-like_C_2
P-loop_SecA
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
128800100
NCBI-ProteinID:
XP_053820984
LinkDB
All DBs
Position
26:1528583..1556843
Genome browser
AA seq
1128 aa
AA seq
DB search
MADQMKRTNILWLGEIRNCSYIRDIMNWNKGGPGTKRGFGFGGFAITPGKKEEPKLSQQS
HSAFGSAGSSAAFAKSGPPQLPSFYKIGSKRANFDEENAYFEDEEEDSSNVELPYIPAEN
SPTRQQFHSKSADSDSDDDPLEAFMAEVEDQAARDMKRLEDKDKEKKNVKGIRDDIEEED
DQEAYFRYMAENPTAGVVQEEEEDNLEYDSDGNPIAPSKKIIDPLPPIDHSEIEYPPFEK
NFYDEHEEITSLTPQQVVELRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQ
PTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPT
RELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKA
TNLQRVTYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILID
PIRVVQGDIGEANEDVTQIVEIFPSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELA
NNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGIPILVATDVAARGLDIPSIKTVINYDV
ARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQN
PWFRKSRFKGGKGKKLNIGGGGLGYRERPGLGSENTDRGNNNSVMSNYEAYKPSTGAMGD
RLTAMKAAFQSQYKSHFVAASLNNQKTGSSAAGASGWTSAGSLNSVPTSSAQQNAANPES
PIAATAAAKGVPGFTSTGSLSSVPTFPSAGAQGFNSTNASTNSREGGGGIVRERYNDNRN
SRHGEAPRRGEGGGGRGEGGGRGEGGGRGEGGSGRGEGGGRGEGGGRGEGGGGRFSEGQR
FNEGQRFNEGQRFSEGQRFSEGQRFSEGQRFNEGQRFNEGQRFNEGQRFNEGQRFNEGQR
FNDGQRFSEGQRFNDGQRYNEGQRFNEGQRFNDGQRFNDGQRFNEGQRFNEGQRFNEGQR
FNDGQRYNEGQRYNEGQRFNDGQRHSEGGGRHSDPSRHGDVHRHSEGRHFTDLPGGNRNN
GDSRNSTEGRNSESRNGENRKEANSRDNKTDGFAVPEPPKRKKSRWDS
NT seq
3387 nt
NT seq
+upstream
nt +downstream
nt
atggctgaccagatgaagaggaccaatatcctctggcttggggagatcaggaattgcagc
tatatcagggacatcatgaattggaataaaggtggacctggtactaagagaggctttggg
tttggtggctttgccataacacctggcaagaaagaggagcccaagctgtctcagcagtcc
cacagtgcttttggcagcgccggctcctcggcagcatttgcgaaatcggggcctcctcag
ctgccttccttctacaaaattgggtcaaagagagccaattttgatgaggagaatgcgtac
tttgaggatgaagaggaagattccagcaatgtggaattgccctacattcctgcagagaat
tcccccacccggcagcagttccattccaaatcagcggactctgacagcgatgatgatcct
ctggaggcattcatggctgaagtggaggatcaagctgctcgagacatgaagagactcgaa
gataaagacaaagaaaaaaagaacgttaagggtattcgagatgacattgaagaggaagat
gaccaagaagcgtattttcgctacatggctgagaaccccactgctggtgtggtacaggag
gaggaagaggataacctggagtatgatagtgatgggaatccaattgcaccgtccaaaaaa
atcattgatcctcttccacctattgaccattcagagattgaatacccaccatttgagaaa
aatttctatgatgagcatgaggagatcaccagcctgaccccgcagcaagtggtggagtta
cggcataagctgaatctccgggtctccggggctgctcctccaaggcctggcagtagtttt
gctcattttgggtttgatgagcaactcatgcatcagattaggaaatctgagtatacccaa
cccactccaatacaatgtcagggtgttccagtggcactaagtggcagagacatgattggg
atagccaagactggaagtgggaaaacagccgccttcatctggccaatgctgatccacatc
atggatcagaaggagcttgagccaggggatggtcccattgcagtgatcgtctgcccgacc
agggagctctgccagcagatccactccgagtgcaagcgctttggcaaggcctataacctg
cgctccgtggccgtgtacggaggagggagcatgtgggagcaagccaaggccctgcaggag
ggggcagagatcgtggtctgcacaccaggtcgtttgattgatcatgtgaaaaagaaagct
acaaacctgcagagagtcacttaccttgtgtttgatgaagctgacagaatgtttgatatg
gggtttgaatatcaggtcagatcaatcgcaagccacgtacgtcctgacagacagaccctc
ttgttcagtgccacgttccgtaagaagattgagaaattggctcgggatattctgatcgac
ccaattcgggttgtgcaaggagacattggagaggccaatgaagatgtcactcagattgtg
gagattttcccctctgggcccagcaagtggaactggctgacgcggcgcctcgtggagttc
acgtcctcggggagcgtcctcctcttcgtcaccaagaaagccaacgcagaggagctggcc
aataacctcaagcaggaggatcataacctggggctgcttcatggggacatggaccagagc
gagaggaataaagtcatttcggaatttaagaaaaaggggatccccatcctggtagctact
gatgtggcagctcgagggttggatatcccttccatcaagactgtcatcaactacgacgtg
gctcgggacatcgacacccacacgcaccggatcggccgcaccggccgcgccggggagaag
ggagtggcctacactctgctgacccccaaggacagcaacttcgctggtgacctcgtcaga
aacctggagggtgccaaccagcacgtgtccaaagagctgctggatttggcaatgcagaat
ccatggttccggaaatcccgttttaaaggggggaagggcaagaagctgaatattggtgga
ggtggcttgggataccgtgaacgccccgggctgggctcagaaaatactgaccgtggaaac
aacaacagtgtgatgagcaactatgaggcctacaagccatccacaggggccatgggggac
aggctgacagcaatgaaagcagctttccagtcccagtacaagagtcactttgttgctgca
agtttaaataaccaaaagactgggagctctgctgctggtgccagtggctggaccagtgcc
gggagcctgaactccgtcccgacgagttcagcgcagcaaaacgccgccaatcccgagagc
cccatcgcagccaccgcggcagcgaagggggtcccgggcttcaccagcacgggcagcttg
agcagcgtgcccaccttcccgagcgccggagcacagggcttcaacagcacaaacgccagc
accaacagccgagagggcggcggcggcattgtcagagaacggtacaacgacaaccggaac
agtcggcacggcgaggccccgcggcgaggggaaggcggcggcggccgaggggaaggcggc
ggccgaggggagggcggtggccgaggggagggcggcagtggccgaggggagggcggtggc
cgaggggagggcggtggccgaggggagggcggtggtggccgcttcagcgagggccagcgt
ttcaacgagggccagcgtttcaacgagggccaacgcttcagcgagggccaacgtttcagc
gagggccaacgtttcagcgagggccagcgtttcaacgagggccagcgtttcaacgagggc
cagcgtttcaacgagggccagcgtttcaatgagggccagcgtttcaacgagggccagcgc
ttcaacgatggccaacgcttcagcgagggccagcgcttcaacgatggccaacgctacaat
gagggccagcgcttcaacgagggccaacgtttcaacgatggccaacgctttaacgatggc
caacgcttcaacgagggccagcgtttcaacgagggccaacgcttcaacgaggggcagcgt
tttaacgatggccaacgctacaatgagggccaacgctacaatgagggtcagcgcttcaac
gacggccaacgccacagcgaaggtggtggccggcacagtgacccctcccggcacggcgac
gtccatcgccacagcgagggccggcacttcaccgacttgccgggtggcaaccgcaacaac
ggtgacagcaggaacagcaccgaggggaggaacagcgagagcaggaatggagagaacagg
aaggaggccaacagccgagacaacaagacagatggttttgctgtcccagagcccccaaaa
cggaagaagagccggtgggacagttaa
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integrated database retrieval system
