Vidua chalybeata (village indigobird): 128802414
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Entry
128802414 CDS
T11587
Symbol
SKIC3
Name
(RefSeq) SKI3 subunit of superkiller complex protein isoform X1
KO
K12600
superkiller protein 3
Organism
vcha Vidua chalybeata (village indigobird)
Pathway
vcha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128802414 (SKIC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcha03019
]
128802414 (SKIC3)
Messenger RNA biogenesis [BR:
vcha03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
128802414 (SKIC3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_19
TPR_1
TPR_2
TPR_14
TPR_16
TPR_8
TPR_12
TPR_11
TPR_17
TPR_CcmH_CycH
CFAP70_TPR_C
TPR_9
ANAPC3
CFAP70_mid_TPR
ARM_TT21_C
CABIN1_N
TTC22_N
TPR_15
Retrotran_gag_2
BTAD
Fis1_TPR_C
TPR_5
E_motif
TPR_Psidin_N
TPR_FimV
TPR_30
FlbT
TolB_N
Motif
Other DBs
NCBI-GeneID:
128802414
NCBI-ProteinID:
XP_053824723
LinkDB
All DBs
Position
Z:complement(63201906..63249477)
Genome browser
AA seq
1611 aa
AA seq
DB search
MPRETGTTSPAVPQEEMATALVCHCPASQCACGRVAAEVAESAVAEATTMSNKEVKATLK
SARDAIRNKQYKEALKHCKAVLKQEKNNYNAWVFIGLAAAELEQPDQAKGAYKKAIELEP
NQLLAWQGLANLYEKPNQTDVKEDLADVYQKLLELYESGDKQKWCDVCNKLVELYHQEKK
YLEVAETWQKLIRMKQEEGAEKAELHQLWKKMIQLLKDSTRNQDNKTEQLLLTAFEHALH
SADTVPGEDHQNLYKDFIQCLSKFPHEVARLEKACHDMMALYPTVSYPLEVLCLHFVQSG
TLSEKALHCFSRLLEMDANSGPGIICFGIKCLKENKYKEAVKSLTEGLQKTNQCPAAWYY
LAEAQMKIREHRNAVLSCNQALEALGTPESPNLPWKNLAFQLKAEILIKIADADAAEEAI
KALEQIIDGSSDPVISALRGQAYLNKGLMDQASKISQELLLSHPDVAEAHALEGFIHYSQ
KNYEQAEKSFLNAIERKAGTAEYHQYLGLTYWFMSDETKKDKGKALTQFLKAAKLDSYLG
RAFFYLGNYYRDIAGDKSRARGCYKKAFELDETDEESGTAAVNLSVELGDMDTALSILNK
VTEKARPGTAKWAWLHRGLYYLRTGQPSQAVSDLQAALRADPKDSNCWESLGEAYFNRGS
YSTALKSFRKATELNPGLVYSIYRAAALEQILGKYKNAIATYQQILKKTENYVPALKGLG
ECYLMLARSALGNYLDRKAVDYIEQALAYFTRAVEHRPDVSCLWKLLGDTCTSVHVISPT
KVNVQVLGSLLSKNATKQVLKKNELLILGGRCYGRALKLISLPSIWCDLGINYYRQAEHL
TPVGTDKNEISELLEKSLQCLKKAVRLDSKNHLYWNALGVVASCSAIGNYALAQHSFIKS
VQAEQINVVAWTNLGVLYLATGNIEQAHEAFKVAQSLEPSYLLCWIGQALIAETVGSYDT
MDLFRHTTELSMHAEGAKGYAHWVCSTLQDKANRNTVLYLYNIVQMNAIPAAQVVLSKYT
ERNPDDASAFTMFGFLNEYLHLKQQAAYAYERAASLLKNSEDTEKYNTAMQNYGRSLCAL
GRCDEAIEVYTSIPLTEFDGIVGLALAYFKKGLLEESIKAYEKALSVAESEKDKAHILTA
LAIIEYKLNKVDAAKTLLFKCSLKEPSTESLKALCTLGLVKQDATLATAALKELLKLEKG
NDGIYERCLIASAVYALQGRNVAIQREVSKAIHSYPDNSALWSLLSQLVPLYASRKPKGG
AVAGSVAYTLDVNHGKEVLLNIAVNQLVAGCHMLEDKKNNPLKNIQKAIHLCPDNPAAWA
VLMAACHAENTVVCLNNTEPKRTGLEMTLVSTVSAKTGESNLPHNYVRTLEDWCLCQAIT
SLQETGKLSEAEALCNKGLKSCPEHPALFLLLRQVQCKQLLQSHKELPDNILEELRKTVM
SSSSSAAAWQWLAKIYQSQRMMTGAEMCYRKSLQLASQQGSWNGKLSSLLRLAMLALEIC
MANVPNEHWPSLVQEATTEALKLSPCPLAALLQALLQYNRKMGARETRRMLERVVYQPAN
PETIVSVARWYLLQHLYAKDDCELIDVLIENAKANGDVRALELNEKLSASA
NT seq
4836 nt
NT seq
+upstream
nt +downstream
nt
atgccccgggaaacgggaactacatctcccgcagtgccccaagaggaaatggcgactgcc
ctggtgtgtcactgccccgcgtcgcagtgcgcatgtggtcgggtggcggctgaggtggcg
gagtcggcggtggctgaagcaaccacaatgtcaaataaggaggtgaaggcaacattaaag
agtgctagagatgcaataagaaataaacagtataaggaggccttaaaacattgcaaggca
gttttgaagcaagaaaaaaataactacaatgcttgggtattcattggcctggcagctgct
gagttagagcagcctgatcaggccaaaggagcatacaagaaggctattgaacttgaacca
aaccagttactggcatggcagggattagcaaatttgtatgagaaacccaaccaaacagat
gtcaaagaagacttagcagatgtttaccaaaaactcttggaactttatgaaagtggtgac
aagcagaaatggtgtgatgtatgtaacaagcttgtggaactataccatcaagaaaagaaa
tatttagaggtggctgaaacttggcagaaactaataaggatgaaacaggaggaaggtgca
gaaaaggcagagcttcatcagctctggaagaagatgatccagttactgaaagacagtaca
aggaaccaggataataagactgagcagttgcttttgactgcatttgaacatgcgctgcac
tctgctgacaccgttcctggtgaagaccaccaaaatctttacaaagacttcatacagtgc
ttgtcaaaatttcctcatgaagtagctaggttggaaaaggcctgtcatgatatgatggct
ttgtaccctactgtgagttaccctttggaagtactttgcttgcactttgttcagtcaggt
actttgtcggaaaaggccctacactgtttctctaggcttttggagatggatgcaaacagt
ggtcctggcatcatttgttttggtataaaatgcctcaaagaaaataaatacaaggaggct
gttaagagtcttactgaaggtttgcagaagactaaccagtgtccagcagcatggtattat
ctggcagaggcgcagatgaaaatccgtgaacacagaaacgctgtcctgtcctgcaatcaa
gctcttgaggctcttggaactcctgagagtcctaatcttccatggaagaaccttgccttt
cagttgaaagcagagattttgattaaaatagctgatgctgatgctgcagaagaagcgatt
aaagcacttgagcagattatagatggaagcagtgatccagtgatttcagctctcaggggt
caggcttatcttaacaaaggtttaatggatcaggcttcaaagatttcacaagagcttctc
ttgtcccaccctgatgtggctgaggcccatgctctagagggtttcatccattattcccaa
aagaactatgaacaggcagaaaaaagttttctaaatgctattgaaagaaaggctggaact
gcagagtatcatcagtacctagggctcacatactggttcatgagcgatgagacaaaaaaa
gacaaaggaaaagcactcactcagttcctgaaggctgcaaaattggacagctacttggga
agggcctttttttatctaggtaactactacagagacattgctggagacaaaagtagagct
cgtggttgctataaaaaggcttttgaactggatgagacggatgaagaatctggaacagca
gctgtcaacctaagtgtggaacttggagacatggacactgccctgtcaatcctgaataag
gtaactgaaaaagcaagacctggtacagcaaaatgggcctggcttcatcgtggtctttac
tacttgagaactggtcagccatcacaagcagtgtctgatttgcaggcagctctaagggct
gatccaaaggattccaactgctgggagtctctaggggaggcttacttcaacagaggtagc
tactcaacagctctgaaatccttcaggaaagcaactgagctgaacccagggctcgtgtac
agcatttacagagctgcagcacttgagcagattctaggcaaatacaaaaatgctattgct
acctatcaacaaatattaaagaagacagaaaactatgtgcctgcattgaaaggacttggc
gagtgttatctcatgctggcaagatcagcccttggcaactatttggataggaaggctgtg
gattacatagagcaggcccttgcatattttacaagggcagtagagcaccgtcctgatgta
tcttgcctctggaaactgttaggagatacctgtactagtgtgcatgttatttcaccaacc
aaagtgaatgttcaagtactaggatcccttctgagtaaaaatgcaaccaaacaggtgctg
aagaaaaatgagcttctcatactgggaggaaggtgttatggcagagctttaaagctgata
tctttgcctagcatatggtgtgatcttggaataaattattatcgccaagcggagcacctc
acaccagttggcactgacaagaatgagatcagtgaactgctagagaagtctttgcagtgt
ctcaaaaaagcagtgagacttgacagcaaaaatcatctttattggaatgcacttggtgta
gttgcttcctgtagtgctattgggaattatgctcttgcacaacattcgttcatcaaatct
gttcaagctgagcaaattaatgttgttgcctggaccaacttgggggttttgtatctggca
actggaaacatagagcaagctcatgaagccttcaaggtagcccagtctctggaaccttct
tacctgttgtgttggattggacaggctcttattgcagagactgtaggcagctatgatacc
atggatctcttcaggcatacgactgaactcagtatgcatgctgagggagcaaaaggctat
gcccactgggtatgttcaacgctgcaggataaagccaacagaaacactgtactgtatctg
tacaacattgttcaaatgaatgctataccagcagcccaagtggtcttgagcaaatacaca
gaaagaaatccagatgatgcttctgctttcactatgtttgggtttttgaatgagtatctg
catctaaaacagcaggcagcctatgcctatgagagggcagcttcactgctgaaaaactca
gaggatactgagaaatacaatacagcaatgcaaaactatggcaggtcactatgtgctctt
gggcggtgtgatgaggccattgaagtttacacatcaataccgctaacagagttcgatggc
attgtggggctagccttagcttacttcaagaaaggactcttagaagaaagtatcaaagcc
tatgaaaaagccttgtctgttgctgagtcggaaaaagataaagcacatatcctgactgcc
ttggcaataatagaatataaactgaacaaagtggatgctgcaaagacactgctgtttaaa
tgctcattaaaggaacctagtacagaaagtctgaaggctttgtgcacactgggattggta
aagcaggatgcaacacttgcaacagcagcccttaaagaattactgaagcttgaaaaaggg
aatgatgggatttatgagaggtgtcttattgcatctgctgtttatgcattacaaggtaga
aatgtggcaatccagagggaagtctccaaagcaatacacagttaccctgataactctgcc
ctttggtctcttctgtctcaactagttccactgtatgcatccagaaagccaaaaggagga
gctgtggcaggaagtgtcgcatatacacttgatgtaaaccatggaaaggaagtcctgctg
aatattgcagttaatcagttggtagcaggatgtcacatgttagaagataagaaaaacaac
cctctgaaaaatattcagaaggccatccatctctgtccagataaccctgctgcttgggca
gtgctaatggcagcctgtcatgctgaaaacactgttgtctgtctaaacaacactgaaccg
aaacgaacaggtctagagatgacacttgtgtctacagtttcagccaaaactggagaaagt
aaccttccacataattatgtccgcactctggaagactggtgtctgtgtcaagctattacc
agtctacaggagactggtaaactgtcagaagctgaagccctttgtaacaagggtttaaaa
agctgccctgagcacccagctctgtttttgcttttgagacaagttcagtgtaagcagctg
ttgcagtctcacaaagaacttccagacaacatcctggaggaacttcgcaagacagtcatg
tccagttcatcctcagctgcagcctggcaatggctggcaaaaatatatcagtctcagaga
atgatgactggagcagagatgtgttacagaaagagtctgcagttggcatcacaacagggc
agctggaacgggaagttatccagtctgctcaggctagctatgctcgcactggaaatctgc
atggccaatgtcccaaatgaacactggccatccttggttcaggaggcaacaactgaagct
ttgaaactttctccttgtcccttggcagctctacttcaagccctgctacagtataatcgc
aaaatgggagcaagggagactcggcgaatgttggaaagagtcgtttatcaaccagcaaat
ccagaaaccatagtgtcggtggcacgctggtacctcctgcaacatctgtatgccaaagat
gattgtgaattaatagatgtgcttatagaaaatgccaaagctaatggagatgttagagct
ctggaactaaatgagaaattgtcagcaagtgcctag
DBGET
integrated database retrieval system
