Vidua chalybeata (village indigobird): 128802473
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Entry
128802473 CDS
T11587
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
vcha Vidua chalybeata (village indigobird)
Pathway
vcha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128802473 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcha03019
]
128802473 (MTREX)
03041 Spliceosome [BR:
vcha03041
]
128802473 (MTREX)
03009 Ribosome biogenesis [BR:
vcha03009
]
128802473 (MTREX)
03016 Transfer RNA biogenesis [BR:
vcha03016
]
128802473 (MTREX)
Enzymes [BR:
vcha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
128802473 (MTREX)
Messenger RNA biogenesis [BR:
vcha03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
128802473 (MTREX)
Spliceosome [BR:
vcha03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
128802473 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
128802473 (MTREX)
Ribosome biogenesis [BR:
vcha03009
]
Eukaryotic type
Pre-60S particles
Helicases
128802473 (MTREX)
Transfer RNA biogenesis [BR:
vcha03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
128802473 (MTREX)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
128802473
NCBI-ProteinID:
XP_053824870
UniProt:
A0A851KNF8
LinkDB
All DBs
Position
Z:complement(33459632..33502648)
Genome browser
AA seq
1035 aa
AA seq
DB search
MAEAFGDELFSVFEEDAAAAASGTKKSKAGPAEGARKPGKRLEEKPSVPAAIVKPKREAE
IDSTENVILGKKPKLEDVLSEDVNLIDLMPQVKVQSVETVEGCTHEVALPANEEFTGLKP
RTGKAAKEYPFILDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIF
TSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVA
WVIFDEIHYMRDAERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVI
YTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDHKGRKGG
TKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNA
IDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAM
GINMPARTVLFTSASKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPAI
GKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRTIPEIVERVNN
LEAQYNKIVIPNEENVVIYYRIRQQLAKLGKDIEEYIHKPKYCLPFLQPGRLVKVKNEGD
DYGWGVVVNFSKKSNVKPNSSELDPLYVVEVLLHCSKDSLKNSATESAKPARPDERGEMQ
VVPILVHLVSAISSVRLYIPKDLRPIDNRQSVLKSVQEVQKRFPDGVPLLDPIDDMGIKD
QGLKKVIQKIEAFEHRMYSHPLHNDPNLETIYKLCEKKAQIAMDIKVAKRELKKARTVLQ
MDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATA
LLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEENYLNSFRPNLM
DVVYTWANGANFAHICKMTDVFEGSIIRCMRHLEELLRQMCQAAKAIGNTELENKFAEGI
TKIKRDIVFAASLYL
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggcctttggggatgagctcttcagcgtgttcgaggaagacgcggccgccgct
gcttctggcaccaagaagagcaaagcgggccccgccgagggtgccaggaagccgggaaaa
cgactggaagaaaaaccttcagtaccagcagcaatagtcaaaccaaaaagggaagctgag
attgatagtactgaaaatgtcattttgggaaaaaaaccgaaattggaagatgttttatca
gaagatgttaatctgatagatctgatgcctcaagtaaaggtgcagtctgtggaaactgtt
gaaggttgtacacatgaggttgcgcttccagcaaatgaagaattcacaggtctgaagcca
agaactggaaaagctgcaaaagaatatccatttattcttgatgccttccagagagaagct
attctttgtgtagataataaccagtctgtattggtgtcagctcacacatcagctggtaaa
actgtttgtgctgagtatgcaattgccctggctttgagagaaaagcagcgtgtgatattt
acaagtccaattaaagctttgagtaatcagaagtaccgtgagatgtatgaagaatttcag
gatgttggtttgatgactggggatgtcaccattaatcctacagcttcttgtttggtaatg
acaactgagatcttgagaagtatgctttacagaggttctgaggttatgcgtgaagtcgca
tgggttatttttgatgaaattcactacatgagagatgcagaacgtggtgtggtttgggaa
gagactattattttgcttcctgataatgtacattatgtgttcctttctgcaactattcca
aatgcccgtcagtttgctgaatggatctgccatcttcacaaacagccttgccatgtgatt
tacactgactatcgacccactccgctgcagcactatatatttccagcaggaggagatgga
ctccatctggttgttgatgaaaatggagatttcagagaagataattttaatacagcgatg
caagtgcttagagatgcaggagacttagcaaaaggggaccataaaggcaggaaaggagga
acaaaaggtccttcaaatgtttttaagattgtgaagatgatcatggaaaggaatttccaa
cctgtgattattttcagcttcagtaagaaagactgtgaagcctatgcccttcagatgaca
aagttagatttcaatacagatgaagaaaaaaaaatggttgaagaagtcttcaataatgca
attgattgtctctcagatgaagacaaaaaacttcctcaggttgaacatgtgcttcccctt
ctgaaacgaggaattggtattcatcatggtggtttgcttcctatcttgaaagaaaccata
gaaatccttttctcagagggcctaataaaggccttatttgcaacagagacatttgctatg
ggaattaatatgccagccagaactgtgctgtttacaagtgccagtaaatttgatggaaaa
gatttccgatggatatcctcaggtgaatacattcaaatgtcaggtcgcgcaggacgccga
ggtatggatgacagaggaatagtaattcttatggtggatgaaaaaatgagtccagcaatt
ggcaagcagcttttgaagggttcagctgatcccttaaacagtgctttccacctgacatac
aacatggtattgaacttacttcgagtagaggaaattaacccagaatacatgttagaaaaa
tcattttatcagttccaacattacagaactattccagaaatagtggaaagagtcaataat
ttggaagcacagtacaacaaaattgtaattcccaatgaagaaaatgtggtgatatactac
agaatccgccagcagcttgcaaaactgggtaaagatattgaagagtatattcacaaacca
aagtactgcttgccctttctacagccaggaagactggtaaaggtgaagaatgaaggtgat
gactacggatggggagtggttgttaatttctctaagaaatcaaatgttaagccaaattcc
agtgaattggacccattgtatgtagttgaagtgctcctgcactgcagcaaagacagttta
aaaaattctgctactgagtctgcgaaaccagccagacctgatgagagaggagagatgcag
gttgttcctattttggtgcatcttgtctcagctatcagcagtgtccgactctacatacca
aaagacctgaggcctattgataacaggcaaagtgtgttaaaatctgtacaagaagtacag
aaacggtttcctgatggagtgcccttactagaccctattgatgacatgggcatcaaagac
caagggttgaaaaaagtaatccaaaaaatagaggcatttgagcataggatgtattcacat
cctcttcacaatgatccaaacttggaaacaatatacaaactttgtgaaaaaaaagcacag
attgctatggatattaaagtggcaaagcgagaattgaagaaagccagaactgtcctgcaa
atggatgagctcaaatgccgcaagcgtgttttgagaagactggggtttgccacgtcatca
gatgttattgagatgaaaggacgggttgcttgtgaaatcagcagtgctgatgaactactc
ctgacggaaatgatgttcaatggtctcttcaatgatttgtctgcagaacaggcaactgca
ctacttagctgtttcgtgtttcaagagaattccagtgaaatgccaaaactgactgagcag
ctggcaggaccacttcggcaaatgcaggagtgtgcaaaaagaatcgccaaggtgtcagca
gaagcaaaactggaaattgatgaagaaaattacttgaattctttcagacccaacctaatg
gatgttgtgtatacatgggcaaatggagctaactttgctcacatctgcaaaatgacagat
gtctttgaaggtagcataattcgttgcatgaggcatctagaagaactgcttcggcagatg
tgccaggccgcaaaagccattgggaacacagaactggaaaataagtttgcagaagggatt
acaaaaatcaagagagatattgtgtttgctgcaagcctttacctgtaa
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