Vibrio cholerae O1 IEC224: O3Y_00870
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Entry
O3Y_00870 CDS
T01766
Symbol
uvrD
Name
(GenBank) DNA-dependent helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
vci
Vibrio cholerae O1 IEC224
Pathway
vci03420
Nucleotide excision repair
vci03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vci00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
O3Y_00870 (uvrD)
03430 Mismatch repair
O3Y_00870 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vci03400
]
O3Y_00870 (uvrD)
Enzymes [BR:
vci01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
O3Y_00870 (uvrD)
DNA repair and recombination proteins [BR:
vci03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
O3Y_00870 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
O3Y_00870 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
AAA_12
AAA_11
Speriolin_C
Motif
Other DBs
NCBI-ProteinID:
AFC57063
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All DBs
Position
I:194224..196395
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AA seq
723 aa
AA seq
DB search
MIDPSLLLDGLNDKQREAVAAPLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMA
VTFTNKAAAEMRGRIEELMHGTASGMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQ
QRLLKRLIKAHNLDDKQWPARQVAWWINNQKDEGLRPTHINAFDPVTQTYLKLYTAYQEA
CDRAGLVDFAEILLRALELLRGNQHIREHYQARFKHILVDEFQDTNAIQYAWLRMMAGAQ
SNVMIVGDDDQSIYGWRGARVENIEKFTREFPSVNTIRLEQNYRSTKTILEASNTLIANN
SERMGKQLWTDGLVGEPISVYSAYNELDEARFVVSKIKGWQEQGGTLTDCAILYRNNAQS
RVLEEALLQASLAYRIYGGMRFFERQEIKDALSYLRLINNRNDDTAFERVINTPPRGLGD
KTLETIRFAARDRGCTLWDASVGLLNDQVLTGRAASALSRFVELINALEEEGIDMPLHVL
TDHAVKTSGLLEMYQQEKGEKSKARIENLEELVTATRQFEKPEEAQEMTMLTAFLTHAAL
EAGEGQADEHDDAVQLMTLHSAKGLEFPLVFMVGVEEGMFPSQMSAEEAGRLEEERRLCY
VGMTRAMQKLYITYAEMRRLYGQDKYHKPSRFIRELPEGCLDEVRMKAQVSRPTSTGRFS
QTVVKESFNETGFNLGSRVRHPKFGEGTIINFEGSGPQSRVQVAFNGEGIKWLVTAYARL
EKV
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgatcgatccctctctattgctcgacggtctcaacgataaacaacgcgaagcggtggca
gcgccactggaaaacttactgattttggccggtgctggcagtggtaaaacccgcgtactg
gtgcaccggattgcgtggctgatgtcggtggaagaagcctcaccgttttcggtgatggcg
gtgacctttaccaacaaagctgcagccgaaatgcgtggccgaattgaagagctgatgcat
ggcaccgcctctggcatgtggtgtggtactttccacggtatttgccatcgtattctgcgc
gcccattatctcgacgctaagctgctggaagattttcagatcatcgacagtgacgatcag
cagcgtctgctcaaacgcctcatcaaagcgcacaatctggatgataaacagtggccggca
cgccaagtcgcgtggtggatcaacaatcaaaaagatgaaggattgcgcccgacgcacatc
aacgcctttgatccggttactcaaacttatctcaagctgtacaccgcttaccaagaagcg
tgcgatcgcgccggcttggtcgatttcgccgaaattttgctgcgcgccctagagcttctg
cgtggtaatcagcacattcgcgagcattatcaggcgcgctttaagcacattttggtcgat
gaattccaagacaccaacgcgattcagtacgcgtggctacgtatgatggcgggtgctcag
tcgaacgtgatgatcgtgggtgacgatgaccagtcgatttacggctggcgtggcgcgcga
gtggaaaacatcgaaaaatttacccgcgaattcccgagcgtgaataccattcgactggag
caaaactaccgctccaccaaaaccattttggaagcctcaaatacactgatcgccaataat
agcgagcggatgggcaagcagctatggactgacggtttggtcggcgaacccatttcggtg
tactcggcgtataacgagctcgatgaagcacgctttgtggtcagcaaaatcaaaggctgg
caggagcagggcggcacactgaccgattgcgcgatcttgtatcgcaacaacgcccagtcg
cgggtattggaagaggcattattgcaagcgagtttggcctaccgcatttatggcgggatg
cgctttttcgagcgccaagagatcaaagatgcgctgagttatctgcgtttgattaataac
cgcaatgacgacaccgcctttgagcgagtgattaatacgccgccgcgcggtttgggtgat
aaaaccctagagaccattcgctttgccgcgcgcgatcgtggctgcaccttgtgggatgcc
agtgtcggtctgctcaatgaccaagtgctcactgggcgtgctgcgagcgcgctgagccgc
tttgttgaactgatcaacgccttggaagaggaaggcatcgacatgccgctgcatgtgctc
acggaccacgcggtaaaaacctctggtctgctggagatgtatcagcaagaaaaaggcgaa
aaatccaaagcgcggattgaaaacttggaagagctggtgacggcgacgcgccagtttgaa
aagccagaagaagcgcaagagatgaccatgctgaccgcatttttgacccatgcggcactg
gaagccggtgaaggtcaagccgatgagcatgatgatgcggtacaactgatgaccttgcac
agtgccaaaggattagagtttccgctggtgtttatggtcggtgtggaagagggtatgttc
ccgagccaaatgtctgccgaagaggcggggcgtctcgaagaggagcgtcgcctgtgttac
gtcggtatgacccgcgcgatgcaaaagctctacatcacctacgcggaaatgcgccgtttg
tacgggcaagataagtatcacaaaccctcacgctttattcgtgaactgccagaaggctgt
ttggatgaagtgcgcatgaaggcgcaagtcagccgtccaaccagtacagggcgctttagc
caaaccgtagtcaaagaaagctttaacgaaaccggttttaatttgggctcacgagtccgt
cacccgaaatttggtgaaggcaccatcattaactttgaaggcagtggcccgcaaagccga
gtgcaagtggcgtttaatggcgaaggcattaagtggttagtcacggcttacgcgagatta
gagaaggtgtag
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