KEGG   Vibrio cholerae O1 IEC224: O3Y_01605
Entry
O3Y_01605         CDS       T01766                                 
Symbol
hfq
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
vci  Vibrio cholerae O1 IEC224
Pathway
vci02024  Quorum sensing
vci03018  RNA degradation
vci05111  Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:vci00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    O3Y_01605 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    O3Y_01605 (hfq)
   05111 Biofilm formation - Vibrio cholerae
    O3Y_01605 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vci03019]
    O3Y_01605 (hfq)
   03036 Chromosome and associated proteins [BR:vci03036]
    O3Y_01605 (hfq)
Messenger RNA biogenesis [BR:vci03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     O3Y_01605 (hfq)
Chromosome and associated proteins [BR:vci03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    O3Y_01605 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: AFC57208
LinkDB
Position
I:370161..370424
AA seq 87 aa
MAKGQSLQDPFLNALRRERIPVSIYLVNGIKLQGQIESFDQFVILLKNTVNQMVYKHAIS
TVVPARPVSHHSGDRPASDRPAEKSEE
NT seq 264 nt   +upstreamnt  +downstreamnt
atggctaaggggcaatctctacaagacccatttctgaatgcactacgtcgtgaacgtatc
cctgtttctatctaccttgtgaacggcattaaactgcaaggtcagatcgaatcatttgat
caatttgtgatcttgctgaagaacacagtaaaccaaatggtttacaagcatgcgatttct
actgtggttcctgctcgtccagttagccaccacagcggcgaccgcccagcatcggatcgt
ccagcagagaagtctgaagagtaa

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