Vibrio cholerae O1 IEC224: O3Y_06420
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Entry
O3Y_06420 CDS
T01766
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
vci
Vibrio cholerae O1 IEC224
Brite
KEGG Orthology (KO) [BR:
vci00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vci03019
]
O3Y_06420
Enzymes [BR:
vci01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
O3Y_06420
Messenger RNA biogenesis [BR:
vci03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
O3Y_06420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_19
HA2_N
AAA_22
T2SSE
ResIII
nSTAND3
NACHT
AAA_30
SLFN-g3_helicase
ABC_tran
RsgA_GTPase
AAA_23
Zeta_toxin
NTPase_1
TsaE
PhoH
LYTB
AAA_7
Motif
Other DBs
NCBI-ProteinID:
AFC58162
LinkDB
All DBs
Position
I:1470024..1473866
Genome browser
AA seq
1280 aa
AA seq
DB search
MIKDRFRFSKRIDGASKIKNESARNAVFDEIALDIAQSMMVVEQRKQQMPKIEYPALLPV
SQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQPRRLAARSVA
NRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILLAEIQNDRFLNQYDTIIIDEA
HERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSKHFSNAPIIEVSGRTYPVEVR
YRPLAGDDDSESDRDQLEGIFQAVDELCDEGLGDILIFMNGEREIRDTADALSKRNLRDT
EIVPLYARLSAGEQNNIFQPHAGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRT
KVQRLPIEPISQASANQRKGRCGRTEEGICIRLYSEEDFLSRPEFTDPEILRTNLASVIL
QMTALGLGDIEAFPFVEAPDKRNIQDGVRLLEELGAINDQIKDPKKRLTESGKQLARLPI
DPRLARMVLEASKLGCLKEVMIIASALSIQDPRERPSDKQQSADDKHRRFNHEDSDFLTL
VNLWHYIGQQQKALTSNQFRRQCKLDYLNYLRVREWQDVYTQLHQSTREMGFKLNDEPGS
YHAVHSAILVGLLSHIGMKDQEKNEYHGARNARFNIFPASGLFKKQPKWVMSAELVETSK
LWARVVAKIEPDWIEPLAKHLSKRSYSEPHWSKKNAAVMAYEKVMLYGIPIVPKRLVNYG
TIDPVLSREIFIRSALVEGDWETKHAFFKQNRALLAEVEELEHKSRRRDILVDDEELFQF
YDQRVGTEVVSGRHFDAWWKTASRKTPDLLSFEKEMLFKGDASHITDLDYPNFWHQGNLK
LKLSYQFEPGENSDGVTVHIPLPILNQVEPHGFDWQIPGLRHELVVSLIKSLPKTLRKNF
VPAPNYADAFLARVTPFEMPLLDAMEKELRRMTGVTVLREDWKLDQLPAHLKITYRAVDH
RNRKLNESCDLHELKESLKEKVQETLSQVADDDIEQRDLHTWSFGELPKVYQQKRGGFEV
RAYPALVDKKDSVEIKLFETEQEQLSAMRAGQRRLILLNVPSPIKYLHANLPNKSKLGLY
FNPYGKVLDLIDDCIACGVDKLIEERGGMVWEPQAFEALKEHVRAELGDTVVEIAKQVET
ILTTAYNINKRLKGKVDFTMAFALSDVKAQIEGLIFSGFATECGWKRLPDILRYMRAIER
RMEKLPVDPNKDRLHMLKIESVANKYKELLNKIPKGMAIPDNVREIRWMLEELRVSYFAQ
QLGTPYPVSDKRIINAIEAC
NT seq
3843 nt
NT seq
+upstream
nt +downstream
nt
ttgatcaaagaccgttttcgtttcagtaaacgcattgatggtgccagtaaaattaaaaat
gaatcggcacgcaacgcggtatttgacgaaatcgcgctcgatattgcgcaatccatgatg
gtggttgagcagcgtaaacagcagatgcccaaaatcgagtatcctgcgctgctgccagtt
agccaaaaacgcgatgatattgcgcaggcgattgctcatcatcaagtggtgatcgtggcc
ggtgaaaccggttcaggcaaaaccactcagctaccgaaaatttgtgcagaattaggccgt
ggtaaatacggtttgattggccacactcagccgcgccgtcttgctgcgcgatcagtggca
aaccgcattgccgaagagatggaaaccgaactcggtggctttgtgggctataaagttcgc
tttaccgatcaaatctcggatcagactcaaatcaaattgatgactgacggtatcttgctg
gcggagatccaaaacgatcgtttcctcaaccagtacgacaccatcattatcgatgaagcg
cacgagcgtagcctcaacatcgactttatcttaggctatctcaagcagcttttgccgcgt
cgtcccgatctcaaagtcatcatcacctcggcgaccatcgaccctgagcgcttctcgaag
cattttagcaatgcgccgatcatcgaagtctcaggccgtacttatcctgtggaagtgcgc
tatcgccctctggcgggggatgatgacagcgaaagcgatcgcgaccaactggaaggcatt
ttccaagccgtggatgagctgtgcgatgaagggctgggcgacattctgatcttcatgaac
ggtgagcgcgaaattcgtgataccgcggatgcgctttcaaagcgcaacctgcgtgatacg
gaaattgtgccactgtatgcacgtttgtcagccggtgagcagaacaatattttccaacct
catgcgggtcgtcgcattgtgctggccaccaacgtggcggaaacctcgctaacggttccg
ggcatcaaatacgttatcgacccaggtaccgcgcggatcagtcgttacagctatcgcacc
aaagtgcagcgtttgccgattgagccgatttcccaagccagcgctaaccagcgtaaaggc
cgctgtggacgtaccgaagaggggatctgtatccgtctctattcggaagaggatttcttg
tcacgccctgagtttactgaccctgagattctgcgcaccaacttagcctcggttatcttg
cagatgacggcattggggctaggcgatattgaagccttcccctttgtggaagcgccagat
aagcgcaacattcaagatggtgtgcgtctgctcgaagagctaggggctatcaacgatcaa
atcaaagacccgaaaaaacgcctcactgaaagtggtaagcagctagcgcgtttgcccatt
gatccacgtttggcacgcatggtgctcgaagcgtctaaattaggctgtttgaaagaagtg
atgattattgcttccgcgttgtcgattcaagatccgcgtgaaagaccgagcgacaagcag
caatcggccgatgacaaacatcgccgctttaatcatgaagattcagatttcctgacgtta
gtgaacttatggcactacatcggacagcagcaaaaagcgttgaccagtaaccagttccgc
cgtcagtgcaagcttgattacctcaactatttgcgtgtgcgcgaatggcaggatgtgtac
acccaactgcatcaatcgactcgggaaatgggttttaagctcaatgatgagccgggcagt
taccatgcggtgcacagtgcgatcttggtcggtttgttgtcgcacatcggtatgaaagat
caggagaagaacgagtaccacggcgcacgtaacgcacgtttcaacatttttcctgcctct
ggcttatttaaaaagcagccgaaatgggtcatgtcggcagagctggtggaaacctccaaa
ctgtgggcgcgcgtggttgcgaaaatcgaaccggattggattgagccactagcgaaacac
ctgagcaagcgcagttacagtgagccacattggtcgaagaaaaatgcggcggtgatggcg
tatgaaaaagtgatgctgtacggcatcccgattgttcccaagcgcttggtcaactatggc
acgattgatcctgtgctcagtcgcgaaattttcattcgcagcgcactggtagaaggggat
tgggaaaccaaacacgccttcttcaaacaaaaccgcgcgctactcgccgaagtggaagag
ttagaacacaaatcgcgtcgccgcgatattctggttgatgatgaagagttgttccaattc
tacgaccagcgtgtcggtaccgaagtggtgtctggtcgccattttgatgcgtggtggaaa
accgctagtcgtaaaacgccggatctgctcagctttgaaaaagagatgctgttcaaaggc
gatgccagccacattaccgatctggattacccgaatttctggcatcaaggcaatctgaaa
ctcaaactcagttaccagtttgagccgggcgagaacagtgacggtgtgacggtacacatt
ccgctgccaatcttaaatcaagttgagccacatggctttgactggcagattcccggtttg
cgccatgagttggtggtgagcttaattaaatcgctaccgaaaacgctgcgtaaaaacttt
gtgccagcccccaattacgctgacgcttttttggcgcgtgtaacaccgtttgaaatgccg
ctgctcgatgcaatggaaaaagagctgcgccgcatgacgggtgtgacggtgctgcgtgaa
gattggaaactcgatcaactgcctgcgcatttaaaaattacttatcgcgcggtggatcat
cgcaatcgcaagctcaatgaaagctgcgatctgcatgagctgaaagagagcttgaaagag
aaagtgcaagagacactttcacaagtggccgatgacgatatcgagcagcgcgatctgcat
acgtggtcgtttggtgagctaccgaaagtgtaccagcaaaagcgtggtggctttgaagtt
agagcttatccggcgttagtcgataagaaagacagcgtcgaaatcaaactgtttgaaacc
gagcaagagcagcttagcgcgatgcgtgccggtcagcgccgtttgattttgcttaacgtg
ccatcaccgatcaaatatctgcacgccaatctgccgaacaaatctaaactcggtttgtac
tttaacccgtatggcaaagtgctcgatttgattgatgactgcattgcctgcggcgttgat
aagctgattgaagagcgcggcggcatggtgtgggagccacaagcatttgaagcgctcaaa
gagcatgtgcgtgccgagcttggcgatacagtagttgagattgccaagcaggtagaaacc
attttgaccacggcttacaacatcaataagcgtttgaaaggtaaggtggatttcacgatg
gcgtttgcgctttctgatgtgaaagcacaaatcgaagggctgattttcagcggctttgcg
actgagtgcggttggaaacgtctgccggacattctgcgttacatgcgcgcgattgaacgc
cggatggaaaaactgccggtcgatcccaacaaagatcgtctgcatatgctgaaaattgaa
tcggtagccaacaagtataaagagctgctgaacaagatcccgaaagggatggcgattccc
gataacgtgcgagaaatccgctggatgctcgaagagttacgcgtgagttattttgctcag
caattgggtacgccgtatccggtttcggataagcggatcatcaacgcgattgaggcttgt
tag
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