Vibrio cholerae O1 IEC224: O3Y_08815
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Entry
O3Y_08815 CDS
T01766
Name
(GenBank) sigma-54 dependent transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
vci
Vibrio cholerae O1 IEC224
Brite
KEGG Orthology (KO) [BR:
vci00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vci03000
]
O3Y_08815
Transcription factors [BR:
vci03000
]
Prokaryotic type
Helix-turn-helix
Other families
O3Y_08815
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
AAA_lid_14
GAF
Sigma54_activ_2
HTH_8
AAA_2
AAA_5
AAA
HTH_30
PAS_4
Mg_chelatase
nSTAND6
MCM
HTH_7
AAA_19
Phage-MuB_C
HTH_29
HTH_23
DUF2681
HTH_28
AAA_3
HTH_Tnp_ISL3
HTH_17
Motif
Other DBs
NCBI-ProteinID:
AFC58637
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Position
I:complement(2003511..2005271)
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AA seq
586 aa
AA seq
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MQLQQLSHVNWLVNSWQRSEQAGLTQQSRAQDIRLSDNKLKERRQELAGLIDTVSRFALP
LFYQLFAHSDSRLILTDQHGVIIGSWGQARFREKLSQIALSSGACWQEPIKGTNAIGTAL
IEQKPISVIGEQHFIQHHHFISCSASPIFDYTGQLIGVLDITSEQQKHTLSTQVVVQNMV
QLVENQLLNQIPHGHVRIDLACEPSLLSSGWQGVIIADESGQILAHNQVAGQLLAQGRVI
GQSVEQVLPRPQTHASFIYTTTPLHSKQHRTRALTPASDLHFGDAEVERCWQQANRVIDK
DIRLLILGQTGVGKNEFVKALHKNSQRKNGPLVAVNCGALAKELVEAELFGYVAGAFTGA
SHKGYQGKVRLADKGILFLDEIADLPLDAQSRLLHVLQDKTVLPVGSNHATKVDIQIIAA
THKNLEQLVTQGLFRQDLYYRLSDLVVELPSFQQRQDRQALIHHIHRRYSDAGQQICGDL
MQRLLAYHWPGNLRELDSLIKVASLMAEGEGVLTFNHLPTHLAQKLSHAAPTATEDDQQK
DIKSTVEASLLKTYQATQGNISQTSRLLGLSRNTIYRKLKALGILK
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atgcaacttcaacagcttagccatgttaattggctggtgaactcttggcagcgtagtgaa
caggcggggttgacccagcagagtcgtgcgcaagatattcgcttgagtgacaacaaactt
aaggagcgtcgccaagagctcgcggggctgattgacacggtcagccgatttgcactaccg
ctgttctaccaactgtttgcacacagtgacagccgtttaattttgaccgaccaacacggc
gtgatcatcggcagttgggggcaagcgagatttcgtgaaaaactgagccaaatcgcgcta
agctccggcgcatgttggcaagagccgatcaaaggtaccaacgctattggcacggctttg
attgagcaaaaacccatttcggtgattggtgagcagcactttattcagcatcatcacttt
atcagttgttccgcgagcccgatttttgattacaccggacagctgatcggagtgttagac
atcaccagcgagcagcagaaacacacgctttcaacccaagttgtggtgcagaatatggta
caactggttgaaaatcagctccttaaccagataccacatggccatgtacgaatcgatctc
gcctgtgaaccctcgttactgagcagtggctggcaaggcgtaattattgcggatgaatcg
ggccagatattggcgcataaccaagtcgcaggtcagttattagcgcaaggcagagtgatt
ggtcaatcggtggagcaggtgctgccacggccacagacgcatgcatcatttatctatacc
accacaccgctccactccaaacaacatcgtacccgcgcgttaacccccgccagtgatctg
cattttggggatgcggaggtggagcgctgttggcaacaggctaatcgggtaattgataaa
gatatccgcttgctgatccttggccaaactggagtgggtaaaaatgaatttgttaaagcg
ctgcacaaaaatagccagcgtaaaaatggtcctttagtcgcggtaaattgtggtgcgctg
gccaaggagctggtggaggcggagctgtttggctatgtcgctggcgcctttaccggagcc
agtcataaaggttaccaagggaaagtgcgtttagccgacaaaggcattttgtttctggat
gaaatcgctgatttacctctagatgcgcaaagtcgcttactgcatgtgttgcaagacaaa
accgtgctgccggtgggttctaatcacgccaccaaagtcgacattcagattattgctgcg
actcacaaaaaccttgaacagttggtcacacaagggctgtttcgccaagatctctactac
cgactcagtgatttggttgtcgagctgcccagcttccagcagcgtcaagatagacaagcc
ctaatccaccatattcatcgccgctacagtgatgctggccaacaaatctgtggtgacttg
atgcaaaggctactcgcttatcactggccgggtaatttacgcgagctagatagcctaatc
aaagtcgcgagtttgatggccgaaggcgagggggtactcactttcaatcatctgccgaca
catcttgcccaaaaactcagccacgcggcgcctaccgctacggaggatgatcaacagaaa
gacatcaaatccacggtagaagcatccttactcaagacctaccaagcaacgcaaggcaac
attagccaaacctcgcgtttgcttgggctgagcagaaataccatctatcgcaaattgaaa
gcgctggggatactgaagtaa
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