Vibrio cholerae O1 IEC224: O3Y_12445
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Entry
O3Y_12445 CDS
T01766
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
vci
Vibrio cholerae O1 IEC224
Pathway
vci03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vci00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
O3Y_12445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vci03019
]
O3Y_12445
03016 Transfer RNA biogenesis [BR:
vci03016
]
O3Y_12445
Enzymes [BR:
vci01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
O3Y_12445
Messenger RNA biogenesis [BR:
vci03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
O3Y_12445
Transfer RNA biogenesis [BR:
vci03016
]
Prokaryotic type
tRNA degradation factors
O3Y_12445
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
RNase_II_C_S1
Rho_RNA_bind
UPF0158
Motif
Other DBs
NCBI-ProteinID:
AFC59359
LinkDB
All DBs
Position
I:complement(2812304..2814769)
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AA seq
821 aa
AA seq
DB search
MSDTTHLDPFADREADNYDNPIPSREYILEFLTQANVPMNRNDLFEALKLEGEEQYEGLR
RRLRAMERDGQLVFTRRQCYALPEKLEMVKGYVIGHKDGHGWVRPEGSLNKEGDILLPHH
QMRTLIHGDFVLVQPSGTDKRGRKEGRLVRILEERNGQIVGRFFFEYGYSYVVPDDSRIH
HDILIPNDLRAGARMGNVVVIEITDRGTRNRGMMGKVVEVLGENMAPGMETQIAIRTHQI
PHEWPAEVEQQVAGLTEEVPEEAKQGRVDLRALPLVTIDGEDARDFDDAVYCEAKKGGGW
RLWVAIADVSYYVRPDTALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCM
VCEMTVSETGKLSGYKHYEAVMNSHARLTYTKVHEILEGDEELRERYKALVPHLEELHKM
YQVLKSARDERGAIEFETVETKFIFNAQRKIESIEPVVRNDAHKLIEECMILANIASASL
VEKAKEAALYRVHEPPGEERLTGFRDFLGELGLDLSGGLEPSPTDYANLMKQIGERPDKE
LIQTMLLRSMKQAVYNADNAGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKQEGRN
QDRWTPTGGYHYSFDDMDFYGEQCSMTERRADDATREVSDWLKCEYMQDHVGEELEGVVA
NVTSFGFFVRLTELHIDGLVHISTLANDYYHYDPIGQRLVGESFGAIYRLGDAVKVKVLA
VNLDDRQIDFELVETSRKLRGQGKTAKKRADEARAKAQGKKEAATKGACGKSPTKSELKP
QVEATRRPDSEGRSKPKKTKAPKKRKDQARKKSGKVRDKTK
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atgtctgataccacacatcttgatcctttcgctgatcgcgaagccgacaattatgacaat
ccaattccgagtcgtgagtacattctcgaatttttaacccaagccaatgttcccatgaat
cgcaacgatctgttcgaagccctcaaactagaaggcgaagagcaatatgaagggttgcgt
cgtcgcctgcgggcaatggaacgagatggccaactggtgttcacgcgccgtcaatgctat
gccttgccagaaaaactggaaatggtgaaaggctatgtgattggccacaaagacggccac
ggctgggttcgtccagaaggaagcttaaacaaagaaggcgatattttattgccccaccac
cagatgcgtacgctgatccatggtgattttgtcttagtgcagccgagcggtactgataaa
cgaggccgtaaagaagggcgcttagtacgcattctcgaagagcgcaatggccaaattgtc
gggcgtttcttctttgaatacggttactcttatgtggtgccggatgactcacgcattcat
catgacattctgatccccaatgacttacgtgccggcgctcgcatgggcaacgtggtcgtg
attgaaattaccgaccgtggcacgcgtaaccgcggcatgatgggtaaagtcgttgaagtg
ttgggtgaaaacatggccccgggtatggaaacgcaaattgcgattcgtactcaccaaatt
ccccatgaatggcccgcagaagttgagcagcaagtagcgggattgaccgaggaagtacct
gaagaagccaagcaaggccgtgtcgatctacgtgctttgccattagtcacgatcgatggc
gaagatgctcgagatttcgatgatgctgtctattgtgaagcgaaaaaaggcggtggctgg
cgtttatgggtcgcgattgccgacgtgagctattacgtacgtcccgataccgctctcgat
aaagaagcgatcaaccgcggtaactcggtctatttcccatcgcaagttgtcccaatgttg
ccggaagtgctgtcgaacggcctctgttcactcaacccacaagtcgatcgcttgtgcatg
gtgtgtgaaatgaccgtatcggaaacgggtaagctctcgggctacaagcattacgaagcg
gtaatgaactcgcacgctcgcctgacttacaccaaagtgcatgaaatcctcgaaggggat
gaagaactgcgcgagcgttataaagcgctggttcctcatcttgaagagttgcacaaaatg
tatcaggtgctgaaaagtgcacgcgatgagcgtggcgcgattgagtttgaaaccgttgaa
accaaattcatcttcaacgctcagcgcaagattgaaagcattgagcctgttgtacgtaac
gatgcgcataagctgattgaagagtgtatgatcctcgccaacatcgcctctgcctctttg
gtagaaaaagccaaagaagcggcgttgtaccgtgtccatgagccaccaggtgaagaacgt
ctcactggcttccgtgatttcctcggtgagttggggctcgatctctccggtggccttgag
ccatcaccgaccgactacgccaatttaatgaagcaaattggtgaacgtccagataaagag
ctgatccaaaccatgttgctgcgctcgatgaagcaagcggtgtataacgcggataacgcg
ggtcactttggcttggcgttgaaacgttacgcacactttacatcgccaatccgtcgttac
ccggatttgttgctgcatcgtgcgatcaaatatctgatcgcgaagcaagaagggcgcaac
caagaccgttggactccaaccggtggctatcactactccttcgatgacatggacttctac
ggtgagcagtgctccatgactgagcgccgcgctgatgatgcgacgcgcgaagtgtctgac
tggctcaaatgcgagtatatgcaagatcatgtgggtgaagaattagaaggcgtcgtcgcg
aacgtcaccagtttcggcttctttgtccgtctcactgagctgcacattgacggcctggta
cacatttcgactctggctaacgactactaccactacgatccgattggtcagcgtctggtg
ggggaaagttttggtgccatctatcgtcttggtgatgcggtaaaagtaaaagtgttggcg
gtaaaccttgatgatcgccaaattgactttgaattggtcgaaactagtcgtaagctacgc
ggccaaggtaaaaccgccaagaaacgtgccgatgaagctcgagccaaagcgcaaggtaaa
aaagaagcggccactaaaggtgcctgtggcaaatcaccaacgaaatcagagttgaaacca
caggtagaagcgacgcgccgtccagacagtgaaggccgtagcaaaccgaaaaagaccaaa
gcgccgaaaaaacgcaaagaccaagctcgtaagaaaagcggcaaagtacgagataaaacc
aaatag
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