Vibrio cholerae O1 IEC224: O3Y_17198
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Entry
O3Y_17198 CDS
T01766
Name
(GenBank) GGDEF family protein
KO
K20962
c-di-GMP phosphodiesterase [EC:
3.1.4.52
]
Organism
vci
Vibrio cholerae O1 IEC224
Pathway
vci05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vci00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
O3Y_17198
Enzymes [BR:
vci01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
O3Y_17198
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Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
GAF
GAF_2
Motif
Other DBs
NCBI-ProteinID:
AFC60256
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Position
II:728779..730662
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AA seq
627 aa
AA seq
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MAPILSHSIPIPSSMQANWQQMLNLLAEVLKVSATLIMRLRHHDLDVFCTSVGSDNPYQV
GMTERLGTGLYCETVVNTRQILLVSNADLDPLWKDNPDLELGMRAYCGVPLQWPNGELFG
SLCVTDRQARQFLSTDQQLIKTFAESIEAQLKTLYQRETLLQMNQDLHFKVRHKMQSIAS
LNQSLHQEIDKRRAAEQQIEYQRSHDLGTGFLNRTALEQQLAMQLAQLAEHEELAVIHIG
FANARQLQARLGYHLWDDVLKQLRERLGPVTEGELLTARPNSTNLTLILKAHPLDTQLNQ
LCHRLIHAGQAQFVTEGLPVHLNPYIGVALSRETRDPQQLLRHAVSSMLACKDSGYKVFF
HSPALADNHARQNQLENYLLQAVRNNDLLLYFQPKVSMKTQRWVGAEALLRWKHPVLGEF
SNETLIHMAEQNGLIFEVGHFVLHQALKAASDWLAVCPTFCIAINVSSVQLKNSGFVEQI
RDLLALYCFPAHQLELEITESGLIVDEPTASDILNRLHTLGVTLSLDDFGTGYASFQYLK
KFPFDGIKIDKSFMEQIEHSESDQEIVRSMLHVAKKLNLNVVVEGIESTQQEQFILEQGC
DVGQGFLYGKPMPSEVFTLKLESHALA
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atggcaccgatcctttcacactcgatcccgatcccttctagcatgcaggcaaattggcag
cagatgctcaacctgctggccgaagtgctgaaagtctcagccaccctgatcatgcgttta
cgccatcacgatcttgatgtgttttgtaccagtgtcggcagtgacaatccataccaagtc
ggcatgaccgaacgattaggcacaggcttgtattgtgaaactgtggtcaatactcgccag
atattgttagtcagtaacgccgacctcgacccattgtggaaggataacccagatctggaa
ttgggcatgcgcgcttactgtggcgtaccattgcaatggccaaacggtgagctttttgga
tctttgtgtgtcaccgatcgtcaagctcgccagtttcttagtaccgatcagcaattgata
aaaacctttgctgaatcgattgaagctcagcttaaaaccctttaccaacgcgaaacgttg
ttgcaaatgaaccaagatttgcacttcaaagttcgtcataaaatgcaaagcatcgcctcg
ctgaaccaatctctccatcaagagatcgataaacgccgtgccgcagaacagcagattgag
tatcagcgcagtcacgaccttgggactggctttctgaatcgcacggcattggagcagcag
ctcgcgatgcagctggctcaattggcggaacacgaagagctcgctgtgattcatatcggt
tttgccaatgcccgccaattacaggcgcggctgggttaccacctttgggatgatgtgcta
aagcagttacgtgagcgacttggtccggtgacggagggggaattactgaccgctcgccct
aactcgaccaatttgacgctgatcttaaaagcccatccgctcgacacccaattaaatcag
ctttgccatcgtttaattcacgctgggcaagcgcaatttgtgacggaggggctgcccgtt
cacctcaacccttatattggtgtggcccttagccgtgaaacacgcgatccgcagcagcta
ctgcgccatgccgtcagcagcatgttggcgtgtaaggactcgggatacaaagtgtttttt
cactctcccgcattagccgataaccatgcacggcaaaatcaattggaaaactatttactg
caagcggtgcgcaacaacgatctgctgctctacttccaacctaaagtcagcatgaaaacc
cagcgctgggtcggtgctgaggcattgttgcgttggaagcatccggtgttgggtgaattt
tccaatgaaaccttgattcatatggcagagcaaaatggtcttatctttgaagtggggcat
tttgttttgcaccaagctttaaaagccgccagtgattggttagcggtgtgcccaaccttt
tgtatcgcgatcaatgtctcttccgtacagctcaaaaacagtggctttgtcgagcagatt
cgagatctgctggcgctgtattgcttccctgcgcatcagttggaactggaaatcaccgaa
agtggcctgatcgtcgatgagccgaccgcgagtgatattctcaaccgactacacacatta
ggcgtgacattatcactcgatgattttggtacgggttacgcttcgtttcagtatctaaaa
aaattcccatttgatggcatcaagattgataaaagttttatggagcagatcgaacacagc
gaaagcgatcaagaaatcgtgcgttctatgctgcatgtagcgaaaaaactgaacttaaac
gtggtggtggaaggtattgagtcgacgcagcaagagcagttcattctggaacagggttgc
gatgtcggccaaggctttttatatggcaaacctatgcccagtgaagtgtttaccctcaag
ctcgaaagccacgctctggcgtaa
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