Vibrio cidicii: ACSEYT_03975
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Entry
ACSEYT_03975 CDS
T11572
Name
(GenBank) sigma-54-dependent transcriptional regulator
KO
K10943
two-component system, response regulator FlrC
Organism
vcid Vibrio cidicii
Pathway
vcid02020
Two-component system
vcid02040
Flagellar assembly
vcid05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vcid00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
ACSEYT_03975
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
ACSEYT_03975
09142 Cell motility
02040 Flagellar assembly
ACSEYT_03975
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
vcid02022
]
ACSEYT_03975
02035 Bacterial motility proteins [BR:
vcid02035
]
ACSEYT_03975
Two-component system [BR:
vcid02022
]
Other families
FlrB-FlrC (polar flagellar synthesis)
ACSEYT_03975
Bacterial motility proteins [BR:
vcid02035
]
Flagellar system
Flagellar assembly proteins
Others
ACSEYT_03975
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_activat
Response_reg
AAA_lid_14
Sigma54_activ_2
HTH_8
AAA_5
HTH_30
AAA_2
Mg_chelatase
AAA_16
HTH_20
DUF2089
MerR
MCM
HTH_24
HTH_11
AAA_19
HTH_Mga
FleQ
AAA_3
HTH_Crp_2
HTH_28
AAA
AAA_7
HTH_5
Sigma70_r4_2
IstB_IS21
HTH_10
Motif
Other DBs
NCBI-ProteinID:
XXO37341
LinkDB
All DBs
Position
1:883395..884807
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AA seq
470 aa
AA seq
DB search
MAQSKVLIVEDDEGLREALVDTLALAGYEWLEADCAEDALLKLKAHSVDIVVSDVQMAGM
GGLALLRSIKQNWPNLPVLLMTAYANIEDAVSAMKEGAIDYMAKPFAPEVLLNMVSRYAP
VKSDDNGDAVVADEKSLRLLALADKVARTDANVMVLGPSGSGKEVLSRYIHNASLRKDGP
FVAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQGGTILLDEISEMDLNLQAK
LLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVSEGNFREDLYYRLNVFPLTWPAL
RERRGDIVPLAKHLAERHCMKQGIAVPRFSPQALDKLTHYPWPGNVRELDNVVQRALILS
ENSDIEQDHILLEGVDWQDANSLQNVVQQTSDVVVPDVKPVAQPDAFSRSIVGGDSLGSE
LRDQEYAIILETLIECQGRRKEMAEKLGISPRTLRYKLAKMRDAGIDIPG
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atggctcaaagcaaggtgttaatcgtagaagacgacgaaggtctgcgcgaagcgctggtc
gatacattggcattagcggggtatgaatggctcgaagcagattgcgccgaagatgcacta
ctcaaactcaaagcccattcggtggatattgtggtctctgacgtacaaatggccggcatg
ggtgggctcgcactattgcgtagcatcaagcaaaactggccaaatttgccggtgttgctg
atgacggcgtatgccaacattgaagacgccgtgtcagcgatgaaagaaggggcgattgac
tacatggccaagcctttcgcgccagaagtgttgctcaatatggtcagccgttacgctcct
gtcaaatcggacgacaatggtgacgcggtagtggcggatgaaaagagcttacgactgctt
gcgctggctgacaaagttgcgcgcaccgacgccaacgtgatggtgcttggcccaagtggt
tcgggtaaagaagtgctatcgcgttacattcataatgcgtcgttgcgtaaagacgggcca
tttgttgcgattaactgtgccgcgatcccagataacatgctagaagccaccttgtttggc
tacgaaaaaggggcgttcactggcgcagtgcaagcttgcccgggcaaatttgaacaggcg
caaggtggtacgatcctacttgatgagatcagtgaaatggatctcaatctgcaagccaaa
ctgctgcgcgtactgcaggagcgagaagtggagcgcctgggtagtcgcaagagcatcaag
ttggatgtgcgcgtcctagccaccagtaaccgtgacttaaagcagtatgtttccgaaggg
aatttccgagaggatttgtattaccgtctgaatgttttcccattgacttggcctgcgtta
cgtgagcgccgaggggatatcgtaccgctcgccaaacatctggcagagcgtcactgcatg
aaacaggggattgcggtacctcgtttttcacctcaagcgctggacaaacttacgcattat
ccttggccgggtaacgtgcgcgagctagacaacgtggtgcagcgcgccctcatcttaagt
gaaaacagcgatatcgagcaggatcatatcctgttagaaggggtagattggcaagacgcc
aacagtttgcaaaatgtggtgcagcaaaccagtgatgtcgtagtgccggacgtcaaaccg
gtcgcgcagcctgatgcgtttagccgcagtatcgttggcggagatagcttaggtagcgaa
ttacgagatcaagagtatgccatcattttagagactttgattgaatgccaaggtcgccgt
aaagagatggcggaaaaactgggtatcagcccgagaactttgcgctacaaattggccaag
atgcgtgatgctggtatcgatatcccgggatga
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