Vibrio cidicii: ACSEYT_13890
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Entry
ACSEYT_13890 CDS
T11572
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
vcid Vibrio cidicii
Pathway
vcid03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vcid00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ACSEYT_13890 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vcid03021
]
ACSEYT_13890 (rpoC)
03400 DNA repair and recombination proteins [BR:
vcid03400
]
ACSEYT_13890 (rpoC)
Enzymes [BR:
vcid01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ACSEYT_13890 (rpoC)
Transcription machinery [BR:
vcid03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ACSEYT_13890 (rpoC)
DNA repair and recombination proteins [BR:
vcid03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ACSEYT_13890 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
XXO36457
LinkDB
All DBs
Position
1:complement(3045942..3050144)
Genome browser
AA seq
1400 aa
AA seq
DB search
MKDLLNFLKAQHKTEEFDAIKIGLSSPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLLMDIPLRDIERVLYFEMYVVTEPGMTDLEKGQMLTEEEYLDRLEEWGDEFTAKM
GAEAIKDLLGSMDMHAEAEQMREELDTTNSETKRKKLTKRLKLVEAFVQSGNNPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYSKLETRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTREMINAKGEGMYLAGPAEAEKAYRTK
TAALHARVKVRITETVVDEDGHSTTETKMVDTTIGRAMLWQIVPKGLPFSIVNQKLGKKQ
ISNLLNEAYRKLGLKDTVIFADQIMYTGFAYAALSGVSVGIDDMVVPPAKYTEIAEAEEE
VREIQEQYQSGLVTAGERYNKVIDIWASTNDRVAKAMMENLSSETVINRDGEEEQQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVVYEHDCGTPEGIEMMPHIEGGDVKVALTELAL
GRVVAEDIVKPGTEEVLIPRNTLLDEKWCQIINENSVDKIKVRSVVTCDSDYGCCALCYG
RDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQVKNNGSVKL
NNAKFVVNKAGKLVITSRASELTIMDEFGRTKEKHKLPYGSTLNKADGDAVTAGETVANW
EAHTMPIITEVAGRVQFVDMIDGVTVSRQTDDLTGLSSSEVTDAAARPAAGKDMRPAIKL
VDEKGNDVMIPGTDMPAQYFLPGKAIVNIEDGTEVGIGDTLARIPQKSGGNKDITGGLPR
VADLFEARRPKEPAILAEHTGTVSYGKETKGKRRLIITREGGDTYEEMIPKHRQLNVFEG
ERVERGDVIADGPEAPHDILRLRGIHAVTQYIANEVQEVYRLQGVKINDKHIETIVRQML
RKCTITHAGDSEFLPGETVEYAQVKIANRNLEAEGKEPARFERELLGITKASLATESFIS
AASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQDRQAKRAQAQEGPS
AAQATDNLAALLNAGFSSDE
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaactttctgaaagcacagcataagaccgaagaatttgatgcaatc
aaaatcggtctgtcttcaccagacatgattcgttcatggtcttttggtgaagtgaaaaaa
cctgaaacgatcaactatcgtacgttcaaacctgagcgcgatggtctgttctgtgcgcgt
atctttggcccggtaaaagactacgagtgtctttgtggcaaatataagcgtctcaagcac
cgtggcgtgatctgtgagaagtgtggcgttgaagttacgcaaactaaagttcgtcgtgac
cgtatgggccacatcgaactggcttctccagtggctcacatctggttcctgaaatcacta
ccgtctcgtatcggtctgctgatggatatccctctacgtgatatcgaacgcgttctgtac
ttcgaaatgtacgtagtgactgaaccgggcatgacggatcttgaaaaaggccaaatgctg
acggaagaagagtatctggatcgcctagaagagtggggcgacgagtttacggctaaaatg
ggtgcggaagcgatcaaggacctactaggttcgatggatatgcacgctgaagccgaacag
atgcgcgaagaactggacaccactaactctgaaaccaagcgtaagaagctgactaagcgt
ctcaagctggttgaagcgttcgtgcaatctggcaacaacccagagtggatgatcctaact
gttcttccagttctgccgccagatctacgtcctctagtaccactagatggcggtcgcttt
gcgacatccgatctgaacgatctataccgtcgtgtgatcaaccgtaacaaccgtttgaag
cgtcttctagagcttgctgctccggacatcatcgtacgtaacgaaaaacgtatgctgcaa
gagtctgttgatgcgctactggataacggtcgtcgtggtcgtgcgatcacaggttcgaac
aagcgtcctctgaaatctcttgctgatatgatcaagggtaaacagggtcgtttccgtcag
aacctgctaggtaaacgtgtagactactcaggccgttctgtaatcacagtaggtccatac
ctgcgtctgcatcagtgtggtcttcctaagaagatggcgcttgagctattcaaaccattc
atctacagcaagcttgaaactcgtggcctagcgacgacaatcaaagcagcgaagaagatg
gttgagcgtgaagaagcggtggtttgggatatcctagacgaagtgatccgtgaacatcca
gtactactgaaccgtgcaccaacacttcaccgtcttggtattcaggcgttcgaaccagta
ctgatcgaaggtaaagcgattcagctacacccacttgtgtgtgcggcgtacaacgcggac
ttcgacggtgaccaaatggcggttcacgtacctctaacgctagaggcacagcttgaagct
cgtactctgatgatgtcgacaaacaacattctgtcgccagcatcgggcgaccctatcatc
gtaccttctcaggacgtggtattgggtctgtactacatgactcgtgaaatgatcaacgcg
aaaggcgaaggcatgtacctagccggtcctgctgaagcggaaaaagcataccgcactaag
acagcagcactgcacgcgcgcgttaaagttcgtatcactgaaactgtggtagacgaagat
ggtcacagcactacagaaactaagatggtggacaccactatcggccgtgctatgttgtgg
caaatcgtaccgaaaggcctaccgttcagcatcgttaaccaaaagctaggtaagaagcag
atttctaacctacttaacgaggcataccgtaagcttggtctgaaagacaccgtaatcttc
gctgaccaaatcatgtacaccggttttgcttacgcggcactttctggcgtgtctgttggt
atcgacgacatggttgtaccaccagcgaagtacactgaaatcgcagaagcggaagaagaa
gtacgcgaaatccaagagcagtaccagtctggtctggtaacggcaggtgaacgttacaac
aaagtgatcgatatttgggcatcgaccaacgatcgcgtagcgaaagcgatgatggagaac
ctttcttctgaaacggtcatcaaccgtgacggtgaagaagaacagcaagagtcgttcaac
agcatctacatgatggcggactcgggcgctcgtggttctgcagctcagattcgtcagcta
gcgggtatgcgtggtctgatggcgcgtccagatggttcaatcatcgaaacgccgatcacc
gcaaactttaaagaaggtctaaacgtccttcagtactttatctcaacgcacggtgctcgt
aagggtctggcggatacggcactgaagacagcgaactcgggttacctaactcgtcgtctc
gttgacgttgcacaagacgtagtagtttacgagcacgactgtggcaccccagaaggcatt
gaaatgatgccgcacatcgagggtggtgacgttaaagttgcgctaactgaacttgctctt
ggccgcgtggtggcagaagacatcgttaagccaggcacagaagaagttctgatcccacgc
aatacgctgttggatgagaaatggtgccagatcatcaacgaaaactcagttgataagatc
aaagtacgttcagtggtaacctgtgattcagactacggttgttgtgcactgtgttacggt
cgtgacctagcgcgtggtcacctagtgaaccaaggcgaagcagtcggcgttatcgccgct
cagtctatcggtgaaccgggtacacagctaacgatgcgtacgttccacatcggtggtgcg
gcatcgacagcagcagcagaaaacagcattcaagtgaagaacaacggttctgtgaagctg
aacaatgcgaagttcgttgtgaacaaagcaggcaaactggttatcacttcgcgtgcatct
gaactgaccattatggatgagttcggccgtaccaaagagaaacacaaactgccttacggt
tcgacactgaataaagcggatggcgatgcagtaacggctggtgaaacggtcgcgaactgg
gaagcgcacaccatgccaatcatcactgaagtggcaggtcgtgttcaattcgttgacatg
attgatggtgtaactgtttcacgtcaaaccgatgatctgactggtctatcttcaagcgaa
gtgaccgatgcggcggctcgccctgcggcaggtaaagatatgcgtccagcaatcaaactt
gtcgatgagaaaggcaacgacgtgatgatcccgggtaccgatatgccggcgcagtacttc
ctaccaggtaaagcgatcgtcaacatcgaagatggcaccgaagtgggtatcggtgacacg
cttgctcgtattcctcagaaatcgggcggtaacaaggacatcaccggtggtctaccacgc
gttgctgacttgttcgaagcgcgtcgaccaaaagaacctgcaattcttgctgaacacaca
ggtacagtgagctacggtaaagagactaaaggtaagcgtcgcttgatcattactcgtgag
ggtggtgatacgtacgaagagatgattcctaagcaccgtcagctgaacgtatttgaaggt
gagcgtgtggaacgtggcgatgttatcgctgacggtccagaagcgccacacgatatcctg
cgtctacgtggtatccacgctgtgactcagtacatcgccaatgaagttcaggaagtttac
cgtttgcaaggcgttaagattaacgacaagcacatcgaaaccatcgttcgtcagatgctt
cgtaagtgtactattactcacgctggtgactctgagttcctaccaggtgagacagtagaa
tacgcgcaagtgaagattgctaaccgcaatcttgaagcggaaggcaaagagccagcacgt
ttcgagcgtgagctgctaggtattaccaaagcttctcttgctactgagtcgtttatctct
gcggcatcgttccaagagaccactcgcgtactaacagaagcggcagtttctggtaagcgt
gatgatctgcgtggcttgaaagagaacgttatcgttggtcgtctgatcccggctggtacc
ggttttgcgtaccaccaagatcgtcaagcgaaacgtgcgcaagcacaggaaggcccatcg
gctgcacaagcaactgataaccttgctgcactgctaaacgcaggcttctcttcagacgag
taa
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integrated database retrieval system
