Vibrio cholerae O1 MJ-1236: VCD_000518
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Entry
VCD_000518 CDS
T00903
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
vcj
Vibrio cholerae O1 MJ-1236
Brite
KEGG Orthology (KO) [BR:
vcj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vcj03016
]
VCD_000518
Enzymes [BR:
vcj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
VCD_000518
Transfer RNA biogenesis [BR:
vcj03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
VCD_000518
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
ACQ62480
LinkDB
All DBs
Position
2:complement(595002..597038)
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AA seq
678 aa
AA seq
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MFQDNPLLAQLKQKIQETLPKKEGTIKASDKGFGFLEVDSKTSYFVPPPYMKKCMHGDKV
VAFIRTENEREVAEPSELIEQSLTRFIGRVKLFKGKLNVAPDHPQLKKLSLKAKTKKGLN
EADFQEGDWVVAHLVRHPLKGDDGFFVQISHKITDANDKIAPWWVTLAENDLPNSEPAGI
DDWQLKDDADLVREDLTALPFVTIDGESTKDMDDALYAQQLPNGDFALTIAIADPTAYIT
PEDEMDKVARERGFTIYLPGRNIPMLPRDLADELCSLMENQVRPALCCSVTIRKDGVIGD
DIRFFAANIKSHARLVYDHVSDWLETGSSEQWQPSEEIAQVVRDLYAFSQARANWRETHA
VVFPDRPDYRFELSADNDVVAIHADMRRTANRLVEESMITANICAGKTLQTTFGFGVFNT
HAGFKAEKMADVVELMAVNGAPNADAETLATVEGFAALRRWLATQETSYLDNRIRKYQSY
SEIGNQPLPHFAMGLDVYATWTSPIRKYGDMINHRLLKAHILGKAPVQTPDETVGEELAL
HRKHHKIAERNVADWLYARTLADEPAKETRFQAEIFDINRPGMRVRLLENGAMAFIPGAL
ILDNKERIECNGEDGTVLIDKEVVYKLGDVLEIVLTEVNQENRSLVGKPTQVFADLVSET
QTSAEQPAEGAENNEPQV
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgttccaagacaatccgctcctcgcgcagcttaagcaaaaaatccaagaaactctgcct
aaaaaagaaggcaccatcaaagccagtgacaaaggttttggcttcctcgaagtcgatagc
aaaaccagctactttgttccgcctccttatatgaagaagtgtatgcatggcgacaaagtc
gtggctttcatccgcaccgaaaatgaacgcgaagtggctgagccttctgaactcatcgag
caatcgctgactcgcttcattggtcgcgtaaagctatttaaaggcaaactcaacgtcgcg
cccgatcatccacaactgaaaaagctgtcgctgaaggcaaaaaccaagaaaggcctcaac
gaagctgacttccaagagggtgactgggtggtcgctcatcttgtgcgccacccgctgaaa
ggtgacgatggtttctttgtgcagatttcacacaaaatcaccgatgctaatgacaaaatt
gccccttggtgggtgacattagcggaaaacgatctgcccaacagcgagccagcgggcatt
gacgattggcaactgaaagatgatgcagacttggttcgtgaagatctgaccgcgctgcct
tttgtgactatcgatggtgaatcgaccaaagatatggacgacgcgctttacgcacagcaa
ctgccaaacggtgattttgcgctgactatcgcgattgccgatccaaccgcttacatcacc
ccagaagatgagatggacaaagttgctcgcgagcgtggctttaccatttatttgccgggt
cgcaacattcccatgttgccacgcgatctggctgatgagctttgctctctgatggaaaac
caagttcgtccagcgctatgctgctcagtcactatccgtaaagatggcgtgattggcgat
gatattcgtttcttcgcagccaacatcaaatctcatgcacgcctagtttacgaccatgtt
tctgactggttggagactggcagctcggaacaatggcaaccaagcgaagaaatcgcccaa
gtagtgcgcgacctctacgctttctcacaagcacgtgcgaactggcgtgagacccatgcc
gtagtgttcccagatcgtccagactaccgcttcgaactgagtgccgataacgatgtggtg
gcgatccatgcggacatgcgccgtacggcaaaccgcttggttgaagaatcgatgatcact
gcgaacatctgtgcgggtaaaacgctgcaaactacatttggttttggtgtattcaatacc
cacgcgggttttaaagctgaaaaaatggccgatgtagtagagctcatggcggtcaacggc
gcacccaatgcggatgcagaaacgctggcaaccgtggaaggctttgccgctctgcgccgc
tggctagccacgcaagaaaccagctacctcgataatcgtattcgtaaataccaaagctac
agtgagattggtaaccagcctctcccccacttcgcgatgggccttgatgtgtacgcaaca
tggacttcgccgattcgtaaatacggcgacatgattaaccaccgtctgctgaaagcgcac
attctcggcaaagccccggtgcaaacgccggatgagacagttggtgaagaactggctctg
caccgtaaacaccacaaaattgctgaacgtaatgtggcagattggctctatgcgcgcacg
ctggctgatgagcctgcgaaagaaacccgcttccaagctgagatctttgatatcaaccgt
ccgggcatgcgtgttcgcttactcgaaaatggcgcaatggcctttattccgggagctctg
atcctcgataacaaagagcgtatcgagtgtaatggtgaagacggcacggtactgatcgat
aaagaagtggtgtacaaacttggtgatgtgctggaaatcgtcctgacagaagtcaatcaa
gaaaaccgcagcttagtgggtaaaccaacgcaagtgtttgctgatctggtttcagagacg
caaaccagtgcggagcaacctgctgagggcgcagaaaataacgagccacaagtttaa
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