Vibrio cholerae O1 MJ-1236: VCD_001314
Help
Entry
VCD_001314 CDS
T00903
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
vcj
Vibrio cholerae O1 MJ-1236
Pathway
vcj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VCD_001314
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vcj03021
]
VCD_001314
03019 Messenger RNA biogenesis [BR:
vcj03019
]
VCD_001314
Transcription machinery [BR:
vcj03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
VCD_001314
Messenger RNA biogenesis [BR:
vcj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
VCD_001314
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_22
AAA_25
OB_RNB
AAA
S1CSD-TOTE-2
DnaB_C
Motif
Other DBs
NCBI-ProteinID:
ACQ59487
LinkDB
All DBs
Position
1:complement(320685..321944)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKNTPVSDLVKLGESLGLENLARLRKQDIIFAILKAHAKSGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIRPPKEGERYFALLKVNTVN
DDRPDNARNKILFENLTPLHANERMVMERGNGSTEDITARVLDLAAPIGKGQRGLIVAPP
KAGKTMLLQNIAQSIASNHPECVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDF
NRSGTRREELLTKTDELQKMWILRKIVHPMGETDAMEFLIDKLAMTKTNDEFFDAMRRQ
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatctaacagaactgaagaacacccctgtgtctgatctggttaagcttggcgaaagt
ctgggccttgaaaacctggcacgcctacgcaaacaagacattattttcgcaatcctcaaa
gcacacgcaaaaagtggtgaagacatttttggcgatggggttctggaaattcttcaagac
ggttttggtttcttacgtagtgcagacagttcataccttgctggccctgacgacatctat
gtgtcacctagccaaattcgtcgctttaacctacgtacaggcgactcaattgccgggaaa
attcgtccgccgaaagagggtgaacgttactttgcattgctcaaagtgaacactgtaaac
gatgaccgtccagacaacgcccgcaacaaaatccttttcgagaacttaactcctctacac
gccaatgaacgtatggtgatggaacgtggcaatggctccacagaagacatcacggcgcgt
gttctcgatttggcagcaccgattggtaaaggtcaacgtggtttgatcgttgctccgcca
aaagcgggtaaaaccatgctgctacaaaacatcgctcaaagcatcgccagcaatcaccct
gagtgtgtgctgatggtactgctgattgacgagcgtccagaagaagtgactgagatgcag
cgcctagtaaaaggtgaagtggttgcttcaacctttgatgagccagcatcgcgccacgta
caagtggcagaaatggtgattgaaaaagccaaacgtctggttgaacacaagaaagacgtg
gtgatcctactggattcaattactcgtctagcgcgtgcctacaacactgtggttcctgca
tcaggtaaagtactgaccggtggtgtggatgcgaacgcattgcatcgtcctaagcgtttc
tttggtgcggcacgtaatgtagaagaaggtggtagcttgaccatcatcgctactgcactg
gttgataccggttctaagatggatgaagtgatttatgaagagttcaaaggtacaggtaac
atggaactgcacttgaaccgtaagattgctgaaaaacgtgttttcccagctatcgacttc
aaccgttcaggtacgcgtcgtgaagagttactgactaagaccgatgagctacaaaagatg
tggattctacgcaagatcgttcacccaatgggcgaaaccgatgcgatggaattcctgatt
gataagttagccatgaccaaaaccaacgatgagttctttgacgcgatgcgtcgacagtaa
DBGET
integrated database retrieval system
