Vibrio cholerae O1 MJ-1236: VCD_001316
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Entry
VCD_001316 CDS
T00903
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
vcj
Vibrio cholerae O1 MJ-1236
Pathway
vcj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VCD_001316
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcj03019
]
VCD_001316
Enzymes [BR:
vcj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VCD_001316
Messenger RNA biogenesis [BR:
vcj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VCD_001316
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
CMS1
Motif
Other DBs
NCBI-ProteinID:
ACQ59489
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All DBs
Position
1:322580..323896
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AA seq
438 aa
AA seq
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MKKTHITEHKFADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKT
LAFLTATFNHLLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYG
GESYDKQLAKLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIR
FLFRRMPEPKDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSN
EHKMALLQTLIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILE
QFTQGDVDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFA
CEEYAINLPAIESYIEHAIPTSDYDPSALLTDLPAPLSLRSSPQQRRTNTAGSRNSNNGG
NRKPQQRRPRAPRPKKEA
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagacgcatatcacagagcataagttcgccgactttggtttacagccacaagtt
attgatggactggaaaaaaaggggtttgtttactgcacccctatccaagcattggcgttg
ccggtactgctctccggccaagacatcgcaggccaggcccaaacagggactggtaaaacg
ctcgcgtttcttactgctaccttcaaccatttattgaccacaccagccgctgaaggccga
gcagaaactcagccacgcgccattattatggccccgactcgcgaactggcaattcagatc
tttaatgatgccgagcctttgttggcctccactggtctgaaagcagctttggcttatggt
ggcgaaagctatgataagcaactcgcaaaattgcaaagtggcgtcgatattctgatcggg
accaccggccgcattatcgatttctacaaacagcgtgtattcaacctcaatcacattcaa
gcagtggtactggatgaagcagatcgcatgtttgatctcggctttattaaagacattcgt
ttcttgttccgccgtatgcctgagcccaaagatcgtctcaacatgctgttctctgccacc
ctctcttaccgcgtgcaagagctggcttttgaacacatgaacaatcctgaacatgtggtg
gtagaacctgagcaaaaaaccggtcatcgcattcaggaagagctgttctacccatcgaac
gaacacaagatggcgctgctacagactcttatcgaagaagagtggccagatcgcgcaatc
atttttgctaacactaagcaccgctgtgaacagatttgggcacatttggcggccgataac
caccgtgttggcctactgactggtgatgtaccgcagaaaaaacgtgagcgtattttagag
cagttcacccaaggtgatgtggacattctggttgcgaccgacgttgcggcgcgcggcttg
cacattcctcaagtgacccacgtgtttaactacgatttgcctgacgattgtgaagactat
gtacaccgtattggccgtacgggtcgtgcgggcgcaagtggccactcgataagctttgcg
tgtgaagagtacgcgattaatttgccggcgatcgaaagctacattgagcatgcgattcca
acctcagactacgatccttcagctctgctgacggacttacctgcgcctctgagcctacgt
tcgtcgccacaacagcgccgcaccaataccgcaggttctcgcaatagcaataatggtggc
aatcgcaaacctcagcaacgccgcccacgcgcaccacgcccgaaaaaggaagcctga
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