Vibrio cholerae O1 MJ-1236: VCD_001395
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Entry
VCD_001395 CDS
T00903
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
vcj
Vibrio cholerae O1 MJ-1236
Pathway
vcj03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
vcj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
VCD_001395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vcj03400
]
VCD_001395
Enzymes [BR:
vcj01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
VCD_001395
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
VCD_001395
DNA repair and recombination proteins [BR:
vcj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
VCD_001395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
COOH-NH2_lig
Auto_anti-p27
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
ACQ59564
LinkDB
All DBs
Position
1:complement(410812..411621)
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AA seq
269 aa
AA seq
DB search
MPELPEVEVSRLGISPHLVGGTIQSLVLRTPKLRWPIPQELKQLEGQTILAIHRRAKYLI
IETAVGSAIVHLGMSGSLRILDGDFPAAKHDHVDLVMTSGKRLRYNDPRRFGAWLWCAPD
ESHEVLGRLGPEPLTEAFNAEYMMDKARNKRIAVKAFIMDNAAVVGVGNIYANESLFTSR
LHPLRPAHSLSLEEWQTLVANIKQVLQVAIKQGGTTLKDFTQSDGKPGYFAQELQVYGKA
KQPCPHCGEPLCEQKIAQRNTFFCPQCQH
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattacctgaagttgaagtcagccgtttagggatctccccacatttggtcggt
ggcaccattcaatccttagtgttacgtacgcccaagttgcgctggcctatccctcaagag
ctgaaacagcttgaagggcagaccattctcgcgattcatcgtcgagccaagtatctgatt
attgaaaccgccgtcggcagtgcgattgtgcatttgggtatgtctggctcgctgcgtatt
ttggatggcgattttcctgccgcgaaacacgatcatgtggatctggtgatgaccagcggc
aaacggctgcgctataacgatccgcgtcgcttcggggcttggttatggtgtgcgcctgat
gagagccatgaagtgctcgggcgtttggggcctgagccgttgaccgaagcttttaacgct
gaatatatgatggacaaagcgcgcaacaaacgcattgcagtcaaagcttttatcatggac
aacgcagcggtcgtgggtgtggggaatatctatgctaatgaatcgctgtttacatcacgc
ctccatccactacgccccgctcattcgctgagcttagaggagtggcaaaccttagtggcg
aacatcaaacaagtgctgcaagtggcgattaagcaaggcggcaccacactgaaagatttt
acccaaagcgatggtaagccgggctatttcgcgcaagagctgcaagtgtatggcaaagcc
aaacagccttgcccccattgtggagagccgctttgcgagcagaaaattgctcagcgcaat
acctttttctgcccgcagtgccagcattga
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