Vibrio cholerae O1 MJ-1236: VCD_001419
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Entry
VCD_001419 CDS
T00903
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vcj
Vibrio cholerae O1 MJ-1236
Pathway
vcj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VCD_001419
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcj03019
]
VCD_001419
03400 DNA repair and recombination proteins [BR:
vcj03400
]
VCD_001419
Enzymes [BR:
vcj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VCD_001419
Messenger RNA biogenesis [BR:
vcj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VCD_001419
DNA repair and recombination proteins [BR:
vcj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
VCD_001419
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
ACQ59588
LinkDB
All DBs
Position
1:complement(435321..437183)
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AA seq
620 aa
AA seq
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MTLTLHSIDMTATLMAESSALFATPERVLHEVFGYQQFRVGQQEVIEAALAGRDSLVIMP
TGGGKSLCYQIPALVLEGVTLVISPLISLMKDQVDQLKANGVAAECVNSTLAREELIAIY
NRMHAGQLKLLYVSPERVLTAEFIERLSHLPLAMIAVDEAHCISQWGHDFRPEYASLGQL
KQRFPNVPVMALTATADDATRHDIMQRLQLNEPHQYLGSFDRPNIRYMLVEKHKPVSQVI
RYLETQRGQCGIIYCGSRKKVEMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQ
IVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMNWL
RRMLDEKPDGAQKQVESHKLTAMGAFAEAQTCRRQVLLNYFGEYRDKPCGNCDICLDPPK
RFDATEEARKALSCVYRVNQNFGIGYVVEVLRGMQNIRIREHGHDKITTYGIGRDHSHDY
WVSIFRQLIHKGMLYQNITRNSTLQLTEEARPLLRGEMNIELAVPRLDTAARAAKSDKLS
GKNYDKKLFAKLRKLRKSIADDEGLPPYVVFSDATLIDMAEIMPTSYGEMLAVNGVGQRK
LEKYADPFLDLIQEHLTYHG
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgactcttactttgcactctatcgatatgaccgcgactttaatggctgaatcttctgct
ctctttgccactcctgaacgtgttttgcacgaggtgtttggctatcagcaatttcgcgtc
ggtcagcaagaggtgattgaggcggcgctggctgggcgtgatagcttggtcattatgccg
actggcggtggtaaatcgctctgttaccagatccctgcactggtgctggaaggggtcacg
ttagtgatttctcccctgatttcgctgatgaaagatcaggttgaccagcttaaagccaac
ggtgtcgccgccgagtgtgtcaattccaccttggcgcgcgaggaactgatcgcgatttat
aaccgcatgcatgctggccagctcaagctgctgtatgtgtcgccagagcgggtattgacc
gccgagtttatcgaacggctcagccatctgccgttagccatgattgcggttgatgaagcg
cactgtatttcgcaatggggacacgattttcgtcctgaatacgcctcattaggccagctt
aagcagcgtttcccgaatgtgccagtgatggcgctgacggcgactgcggatgacgcgacc
cgtcacgatatcatgcagcgtttgcagctcaatgagccgcatcagtatctgggcagcttt
gatcgcccgaacattcgctacatgctggtggaaaaacataagccggtttcacaagtgatt
cgttatctggaaactcagcgcgggcagtgcggcatcatctattgtggcagccgtaaaaaa
gtggaaatgctcactgaaaagctgtgcggcaaccacattcgcgccgccagttaccatgca
gggatggatgccgatgagcgcgcttgggtgcaagaagcgtttcagcgtgatgacctgcaa
attgtggtggcgaccgtggcgtttggcatggggattaataaacccaacgtgcgctttgtg
gtgcattttgatattccacgcaacattgaatcctactatcaggaaactggtcgcgcaggg
cgtgatggtttgcctgctgaagccatgatgctgtacgaccctgccgacatgaactggctg
cgccgtatgctcgatgaaaagcccgatggcgcgcaaaaacaggttgaaagccacaagctc
accgccatgggcgcgtttgctgaagcgcaaacttgtcgccgccaagtattgctcaattat
tttggcgaatatcgcgataagccatgtggtaactgcgatatctgcctcgacccgcccaag
cgttttgatgccacggaagaggcgcgcaaagccttgtcgtgtgtctatcgcgtcaatcaa
aacttcgggattggctatgtggtggaagtgttgcgcggcatgcaaaacatccgcattcgc
gaacatggtcacgacaaaattaccacttatgggattggccgcgatcacagccacgattac
tgggtgagtattttccgccaactgatccacaaaggcatgctctaccaaaacatcacgcgc
aactcgacattgcaactgaccgaagaagctcgccctttgctgcgcggtgaaatgaatatt
gagctggcggtaccgcgtttagataccgcggcgcgcgcggcgaaatccgacaaattgtcg
ggcaaaaactacgacaaaaaactgtttgccaaactgcgtaagctgcgtaaatcgatcgcc
gatgacgaagggttaccaccgtatgtggtgttcagtgacgccaccttgattgatatggcg
gagatcatgccaacctcttatggcgaaatgttggcggtgaatggggttgggcagcgcaag
ctggaaaaatacgccgacccgtttttggatctgattcaggagcatttgacctatcatggc
tga
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