Vibrio cholerae O1 MJ-1236: VCD_001483
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Entry
VCD_001483 CDS
T00903
Name
(GenBank) DNA gyrase subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
vcj
Vibrio cholerae O1 MJ-1236
Brite
KEGG Orthology (KO) [BR:
vcj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vcj03032
]
VCD_001483
03400 DNA repair and recombination proteins [BR:
vcj03400
]
VCD_001483
Enzymes [BR:
vcj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
VCD_001483
DNA replication proteins [BR:
vcj03032
]
Prokaryotic type
DNA Topoisomerases
VCD_001483
DNA repair and recombination proteins [BR:
vcj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
VCD_001483
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
HATPase_c_3
UFD1_N2
TcaA_2nd
Motif
Other DBs
NCBI-ProteinID:
ACQ59652
LinkDB
All DBs
Position
1:521433..523850
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AA seq
805 aa
AA seq
DB search
MSNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIV
VTIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV
SVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGETERTGTTVRFWPSAQTFTNIE
FHYDILAKRLRELSFLNSGVSIKLTDEREEDKKDHFMYEGGIQAFVTHLNRNKTPIHEKV
FHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMDK
EGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLAD
FLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSE
LYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIG
RDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVKK
GKQEQYIKDEEAMNQYQVALAMDGAELHVNADAPALAGEPLEKLVQQYNAAIKLVERMSR
RYPYAMLHELIYVPRINAELCADKAAVEAWTQRLVEQLNAKEVGASQYSVLVEHNAELNV
YLPKIQVRTHGVTHEYLLSADLINSKEYAKLADLSEALDGLIEAGAFIKRGERVQPISSF
AAALDWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADELFTT
LMGDQVEPRRAFIETNALKVANLDV
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaacaattacgattcatcgagtattaaggtactgaagggtctggatgcggtacgc
aagcgtccgggtatgtacatcggcgacactgatgatggcaccggtctgcaccacatggtt
tttgaggtggtggataactcaattgatgaagcgttggcaggttactgtaaagacatcgtg
gtcaccatccacgaagacaactcagtgtcagtcagcgatgacggtcgtggtatcccgacc
gaaatgcatcctgaagagaaagtgtctgcggcagaagtcatcatgactgtactgcacgcc
ggcggtaaatttgacgacaactcctataaagtctccggtggtctgcacggggtaggtgtg
tcggtggttaacgcgctttctgaaaaagtgctgcttaccatttatcgtggtggcaagatc
cattcgcaaacttaccatcatggtgtgccacaagcaccgttggctgtggtaggtgagaca
gagcgtaccggtactaccgtacgtttctggcctagtgcacagacttttaccaatatcgaa
ttccattacgacattttggctaaacgcctgcgtgagctgtcattcctgaactctggcgtg
tcgatcaagctgaccgatgaacgtgaagaagataaaaaagaccacttcatgtatgaaggg
ggtattcaagcgtttgtgacccacttgaaccgtaacaaaacgccaatccatgagaaagtc
ttccactttaaccaagagcgtgaagatggcatcagcgtggaagtggcaatgcagtggaac
gatggtttccaagaaaacatctactgctttactaacaacatcccacagcgtgatggtggt
acccacttagccggtttccgtggtgcgttgacccgtactttgaacaactacatggacaaa
gaaggcttctcgaagaaagcgcaagcggcaacctcgggtgatgatgcgcgtgaaggctta
acggcagtggtttcggtgaaagtgccggatcctaaattctcaagccaaaccaaagataag
ctggtttcttcggaagtaaaatccgcggttgagtcagccatgaatgagaagctggcggat
ttcctagcggaaaacccaagcgaagcgaaaaacgtttgttcgaagattattgatgcggcg
cgtgcgcgtgaagcggcgcgtaaagcccgggaaatgactcgccgtaaaggcgcgctggat
cttgctggcttacccggcaaactggcggattgtcaggaaaaagacccagcattgtctgaa
ctctacatagtggagggtgactcagcgggcggttcagccaaacaaggccgtaaccgtaag
aatcaagcgattctgccgctgaaaggtaaaatcctcaacgtagaaaaagcgcgttttgac
aagatgttgtcttcacaagaagtcgcgaccctcatcactgcattaggctgtggtatcggc
cgtgatgagtacaacccagataaactgcgttatcacaacatcatcatcatgaccgatgcg
gacgtcgacggctcgcacattcgtactctgctgttgacctttttctaccgccaaatgcct
gagttgattgagcgtggttacatctacattgctcagccaccactgtataaagtgaagaaa
ggcaaacaagagcagtacatcaaagatgaagaggcgatgaaccagtaccaagtggcactg
gcgatggatggtgcagagctgcacgtgaatgccgatgcgccagcgttagcgggtgaaccg
ctggagaagctggttcagcaatataacgccgcgatcaagctggttgagcgcatgagccgc
cgttacccttacgcgatgctgcatgagctgatttacgtaccacgcatcaatgccgagctg
tgtgcggataaagccgcggttgaagcttggacacagcgtttagtcgaacagttgaatgct
aaagaagtgggtgcgagccaatacagcgttctggttgaacacaatgctgagctgaatgtg
tacttgccaaaaattcaggtgcgtactcacggtgtgactcatgaatacttactgagcgcg
gatctgatcaactcgaaagagtacgctaagttagccgatctgtcggaagcgctggacggt
ttgattgaagcgggagcgtttatcaaacgtggtgagcgagtacaaccgatcagcagcttt
gccgccgcgctggattggctgatcaaagagtcgcgccgcggtctgtctatccaacgctat
aaaggtctgggcgaaatgaaccctgatcagctgtgggaaactacgatggatccagaaacg
cgtcgtatgatgcaagtcactatcgaagatgcggtaggcgcggacgaactgttcacgacg
ctcatgggcgatcaagttgaaccacgtcgtgcatttatcgaaaccaacgcactgaaagtg
gccaacctcgacgtataa
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