Vibrio cholerae O1 MJ-1236: VCD_001570
Help
Entry
VCD_001570 CDS
T00903
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
vcj
Vibrio cholerae O1 MJ-1236
Pathway
vcj03030
DNA replication
vcj03410
Base excision repair
vcj03420
Nucleotide excision repair
vcj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vcj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VCD_001570
03410 Base excision repair
VCD_001570
03420 Nucleotide excision repair
VCD_001570
03440 Homologous recombination
VCD_001570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vcj03032
]
VCD_001570
03400 DNA repair and recombination proteins [BR:
vcj03400
]
VCD_001570
Enzymes [BR:
vcj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
VCD_001570
DNA replication proteins [BR:
vcj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
VCD_001570
DNA repair and recombination proteins [BR:
vcj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
VCD_001570
NER (nucleotide excision repair)
GGR (global genome repair) factors
VCD_001570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_5
HHH
Motif
Other DBs
NCBI-ProteinID:
ACQ59739
LinkDB
All DBs
Position
1:613513..616233
Genome browser
AA seq
906 aa
AA seq
DB search
MSNGEIPTNAIYGVVNMIRSMMRQFASDRMAVIFDAKGKTFRDEMYDQYKAHRPPMPDEL
RCQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDDN
ITLINTMTNVVLDREGVIEKFGIPPELIIDYLALMGDKVDNIPGVPGVGEKTATALLQGI
GGLEALYANLDKIAALGFRGSKTMAQKLEENRGNAKLSYQLATIKCDVELEESPQTLLKQ
TPDRDALMSLYGKLAFKSWLTELLDGGTGIVTADEQTKTSSVTVSTAATHAAAIPESPAA
HIDRSQYQTILNEQDFQLWLEKLKQAELFAFDTETDNLDYMVANLVGMSFAVAEGEAAYL
PVAHDYLDAPQQLERDWVIAQLKPLLEDESKAKVGQNLKYDASVMARYGVELRGIRHDTM
LQSYVYNSVGGKHDMDSLALRFLQHSCISFEQVAGKGKNQLTFNQIALEEAAQYAAEDAD
VTLRLHQRIHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRL
DQLEQNAYELAGQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPL
PKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRN
EEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIG
VPIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYME
DTRSRAAQLGYVETIFGRRLHLPEITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLV
DEWIEREGDGRVKLLMQVHDELVFEVKESSLSEIESKVQQLMESAAELAVPLVAEAGHGD
NWEQAH
NT seq
2721 nt
NT seq
+upstream
nt +downstream
nt
atgagtaatggtgaaatcccaaccaacgccatctatggtgtggtaaacatgattcgcagc
atgatgcgccagttcgcttcggatcgcatggcggtgatttttgatgccaagggaaaaacc
ttccgtgatgagatgtacgatcaatacaaggctcatcgtcctcctatgccagatgagttg
cgctgtcaggttgaacctttacaccaagttattcgcgctatgggtttaccgctgttggcg
attgaaggtgtagaagctgacgatgtgattggtacgttggcgcgccaagcctcacaagct
ggtatgcctgttttgatcagtaccggcgataaagatatggcgcagttggtggatgataat
attaccctgatcaataccatgaccaacgtcgtgctggatcgcgaaggtgtgattgaaaaa
ttcggtatcccgccagagcttattatcgactacctcgccttgatgggtgataaagtggat
aacattccgggcgtacctggggtgggtgaaaaaaccgcgaccgcacttttgcaagggatt
ggcggcttagaagcgctgtacgccaacctcgataaaatcgctgctttaggcttccgtggc
tcaaaaaccatggcacaaaagctggaagagaaccgcggtaatgccaagctttcttatcaa
ctcgccaccatcaaatgtgatgtcgagcttgaggaatctccgcaaaccctgctaaagcaa
acgccagatcgagatgcgttgatgtcgctctacggtaagctcgcctttaaatcttggctg
accgaattgcttgatggtggtacaggtattgtgacggcggacgagcaaacgaaaacctct
tcagttactgtttcaaccgcagcaactcatgcggctgcgattcctgaaagccctgcggcc
cacatcgatcgcagccagtatcaaaccatcctaaacgaacaagacttccagctttggtta
gagaagttaaaacaagccgagctgtttgcctttgatacggaaaccgacaaccttgattac
atggtcgccaatttggtggggatgtcgtttgcagttgccgaaggtgaagcggcttatctg
ccagttgcgcacgattatctggatgcgccgcagcagttggagcgcgactgggtgattgcc
cagctaaaacctctgcttgaagatgaaagcaaagccaaagtgggccaaaacctcaaatac
gatgcgagcgtgatggcgcgctacggcgttgagctgcgtggtattcgccatgacactatg
ctgcaatcctacgtctataacagcgtgggcggcaaacatgatatggatagtttagcgctg
cgttttttacagcacagctgtatctcgtttgaacaagtggcaggtaagggtaagaaccag
ctcacctttaaccaaatcgctttagaagaagcggcacaatacgcggcagaagatgcggat
gtgacgttgcgtctgcatcagcgaattcatccgttgattgagcaagacgctaagcttgag
caagtgtatcgcgaaatcgaaatgccgctggtacctgtgctatcacgtattgaacgtacg
ggcgtgatgatcgacgacatgctgctcagtgcccaatcgcaagaaattgcgttacgttta
gatcaattagaacaaaatgcttatgagttggcaggtcagccgttcaacttaagctcgccg
aagcagctacaaaccattttgtttgagcagatgaagctgcctgtcttgcaaaaaacgcca
tccggtaccccttcaaccaatgaagaagtgttgcaagagctggctttggattacccactg
cccaaggttctgattgagtaccgcggtctggccaaactcaaatcgacctataccgataag
ttgccgaagatgattaacccaagtacagggcgcgtgcatacttcctatcatcaagcagtg
acggccactgggcgtctctcctccactgatcctaacttgcagaacattccagtgcgtaat
gaagaaggacgccgtattcgccaagcgtttgttgctccgcatggttggaaaatcatggcg
gtcgactactcgcaaatcgagctgcgcatcatggcgcacctgtcgggcgatcaggcgtta
ttggatgctttccgtgatgggaaagatatccatgcggcgacagcagcagaaatcattggt
gtgccgattgatcaagtgagcagtgagcagcgtcgccgagcgaaagcggtgaactttggt
ttgatctacggcatgagtgcgtttggtctggcaaaacagctcggtattccacgcggtgaa
gcacaagagtatatggataaatactttgagcgttatcccggcgtgatgcagtacatggaa
gatacgcgtagccgtgctgcacaattgggttatgtcgaaaccatcttcggtcgtcgctta
catttgccggaaatcacctcacgtaacgctatgcgtcgcaaagcggctgagcgggcagcg
atcaacgcaccgatgcaaggcaccgcggcagacatcatcaaaaaagccatgttgttggtg
gatgagtggattgagcgggaaggtgatggccgagtcaaattgctgatgcaagtacacgat
gaattggtctttgaagttaaagagtcatctttatccgaaattgaaagtaaagtacaacag
ctgatggagtcagcggccgagcttgcagtacctttagtggccgaagccggccacggcgac
aactgggagcaggcgcactag
DBGET
integrated database retrieval system
