Vibrio cholerae O1 MJ-1236: VCD_001590
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Entry
VCD_001590 CDS
T00903
Name
(GenBank) sensory box/GGDEF family protein
KO
K20964
c-di-GMP phosphodiesterase [EC:
3.1.4.52
]
Organism
vcj
Vibrio cholerae O1 MJ-1236
Pathway
vcj05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vcj00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
VCD_001590
Enzymes [BR:
vcj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
VCD_001590
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Gene cluster
GFIT
Motif
Pfam:
EAL
FIST
FIST_C
GGDEF
Motif
Other DBs
NCBI-ProteinID:
ACQ59759
LinkDB
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Position
1:634103..636592
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AA seq
829 aa
AA seq
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MFTVSRLIPDLASANQVLETMDLPHGQSILVQIFSPLSREHVVQLARLIRSRHPQACLLG
CSTEEVIFQGEVHHQVTLLQITVFEQTYLSRAVVDYSDDEAADAERLARQLELTSMSRAV
VCFSWQMDTLQVARFALRDTQGAPVPVAGGAAKQTPSGRWVLLDEACYQNASVAIALHGE
ALYVETGGYTEWQPVGRTYRVTAVEGDRVLRLDDEPIEAIYQRNLGAQADLPHDWLISFP
LMKGECRHQDLYLPLGLAEEGGLRFNRPLALQDEVRFCFDHPSLTLERVYLTAQQLQAKQ
CQQVWVFNCALRLNFMHENHELQPLQAVAPTDGCYCWGELLYEHGQQQVMHHSMTFLALR
EGAVRDDLVPIPLPSYPEGMTSPLFNLIRHAFHDLDAMTDNLAQQIRAQTSLLTASYRRD
RRTGLPNRVVLRERLANFAANEHLIALKVTNFNQINEKYGYPVGDKLLRDLSEQFQVFLD
QKLAGQSGLYAIGVGEWATVFRAKLDGKSIHSHFYQFVEQLEHVNFEPYGLPNVDYLSIS
LCAGLVSQGDFAEHSPDELLLRAIEARRYAFNNNHHFCNAARLKVQESVRQERLNWLSRV
SRAVVRDDVVVYAQPICQARSHIVASYECLVRIEDEGEIILPGNFLPIITDTHLYTRLSR
QMITHTFNMMRHRPEAFSINLSPQDLMSERTLQHLEAAIKSVADPARVGLEVLESEQIKD
YGRMIEVCNHFRTLGATIIVDDFGSGYSNIDEIVKLEPQVIKLDGSLIRNIDQDVKQRRI
AEQLVKLCQVLNAKTVAEFVHNQTVCRISEDMGVDYLQGYFLGRPSRLG
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atgtttacggtctcgcgtctcatcccagatttagcatcggccaatcaggtgctcgaaacg
atggatcttcctcatgggcaatccatcttagtgcaaattttctctcctttgagtcgcgag
catgtcgtgcagcttgcgcggctcatccgtagtcgccatccacaagcttgcctgcttgga
tgcagtaccgaagaggtgattttccaaggggaagtgcaccatcaggtgacgttgctgcaa
atcaccgtgtttgagcaaacttatcttagccgtgctgttgtggattacagtgacgatgag
gctgccgacgcggagcgtttagctcgccagctcgagctcactagcatgtctcgagcagtg
gtctgtttttcttggcagatggataccttgcaagtcgcacgatttgccttacgcgacacg
cagggtgcgccagtgcccgtcgctggtggagccgccaaacaaactcccagtggtcgctgg
gttttgctcgatgaggcttgttatcaaaacgccagtgtggctattgcgctgcatggcgaa
gcgctttatgtcgagacgggtggttacactgagtggcagcctgttgggcgcacctatcgg
gtcacagccgtggagggagatcgggtcttacgtttggatgatgagccgatagaggcgatt
tatcagcgcaatttgggcgcgcaagccgacttaccccatgactggctgatcagttttcca
ctgatgaaaggggaatgccgccaccaagatctttatctgccgctcgggctggcggaggaa
ggcggactgaggtttaaccgcccactggcgctgcaagatgaagtgcgcttttgttttgat
cacccgagtttaaccctagagcgggtctatctcaccgcgcagcaactacaagccaagcag
tgccaacaagtgtgggtgtttaactgtgcgctgcgtttaaacttcatgcatgagaatcac
gagttacaaccgcttcaggcggtggcgccgaccgatggttgttactgttggggagagctg
ctgtatgagcatggtcagcagcaagtgatgcatcatagcatgacgtttcttgccttgcgt
gaaggggcggtgcgtgacgatcttgtcccaatccccttgccgagttatccggaagggatg
acgtcccctctgtttaatttgatccgccatgcgtttcatgatttggatgccatgacggac
aatttggcacagcagatccgcgctcaaacctcattactgacggcgagttaccggcgtgac
cgacgtaccggcttacccaatcgagtggtgttacgtgagcgattggcgaacttcgcggcc
aatgagcacctaatcgccctgaaagtgaccaacttcaatcagatcaatgagaagtacggt
tatccggtaggcgataagctgcttcgtgatttgagtgaacagtttcaggtctttttggat
cagaaattggcagggcagagcggtttgtatgcgattggggtcggtgagtgggcaacggtt
tttcgtgccaagctggacgggaaaagtattcatagccatttctatcagtttgtggagcag
ttggagcacgtcaacttcgagccctacggtttaccgaatgtggattatctgtcgatctcg
ttgtgcgctgggttagtcagtcagggcgattttgcagagcattcgccggatgagctattg
ctgcgtgctatcgaagcacgccgctacgcgtttaacaacaaccaccatttctgtaatgca
gcgcgtttaaaagtgcaagaaagtgttcgtcaggagcggctgaattggctatcgcgggtt
agccgcgcggtggtacgtgatgatgtggtggtttatgcgcagccgatttgtcaggcgcgt
agtcacattgtggcttcctacgaatgtttagtgcggattgaagatgaaggggaaattatc
ttgcctgggaattttctcccgatcatcaccgatactcacctctatactcgtttgagccgg
cagatgataacgcataccttcaatatgatgcgtcatcgcccggaggcgttttcgatcaat
ctttcaccgcaagatttgatgagtgagcgcaccttgcagcatttggaagcggcaatcaaa
tcggtggccgatcccgcccgtgtcgggctcgaagtgttggagagcgaacaaatcaaagat
tacgggcggatgattgaagtgtgtaaccatttccgcacactgggcgcgaccatcattgtc
gatgattttggcagtggttattccaatattgatgagatagtgaagcttgagccgcaggtg
attaagctcgatggcagcttgatccgcaatattgatcaggatgtgaagcagcgccggatt
gccgagcagctcgtgaaattgtgtcaggtactgaatgcgaaaaccgtggcggagtttgtc
cataaccagacggtttgtcgcatcagtgaagatatgggtgtggattatttacaaggctat
ttcttgggtcgaccttcacgcttgggttaa
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