Vibrio cholerae O1 MJ-1236: VCD_001938
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Entry
VCD_001938 CDS
T00903
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
vcj
Vibrio cholerae O1 MJ-1236
Pathway
vcj03410
Base excision repair
vcj03430
Mismatch repair
vcj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vcj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
VCD_001938
03430 Mismatch repair
VCD_001938
03440 Homologous recombination
VCD_001938
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vcj03400
]
VCD_001938
DNA repair and recombination proteins [BR:
vcj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
VCD_001938
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
VCD_001938
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
VCD_001938
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
ACQ60107
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Position
1:1002103..1003857
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AA seq
584 aa
AA seq
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MACHSMIEIQRRPEPDLSLLPDHIDPLLRRLYLSRGVSNVAQLEKAAKALHSFKQLHGID
RAVELLFAAIAEQKRIIVVGDFDADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLS
PEVVDQAIERGAEMIMTVDNGVSSLEGVRYAKQKGLQVVVTDHHLPGQELPEVDAMVNPN
LQQCAFPSKALAGVGVAFYLMMALCVHMRQQGWFAAQGMVEPKLMELIDLVALGTVADVV
PLDDNNRILVHQGLQRIRAGLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLD
DMSFGVELLLCNNIHAARRMASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYG
LVLFQRDWHQGVIGILASRIKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKIDT
QNPGIILKFGGHAMAAGLTIEEQNFERFCRLFDQLVREELDEAALKGIILSDGELKPEEF
SLHTAELLRAGGPWGQAFPEPLFDGEFKVLHQKLVGEKHLKLMLEPLYKGFPTNVMIDGI
AFNVDLRRWPDASVKTVRLAYKLDINEFRGNQSLQLMIDHLEAK
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
ttggcctgtcacagtatgatagaaatccagcgacgccccgaacctgatctctcacttctc
cccgaccacatcgacccactgttacgtcggctttacctgagccgtggtgtaagcaacgtg
gcacaacttgaaaaagccgccaaagcgctgcactcattcaagcagttacatggtattgat
cgtgcggttgagttgctgttcgcagcgattgctgagcaaaaacgcatcatagtcgtcggt
gattttgatgccgatggcgcaaccagttcggcactttccgtgctcgcgctgcgtatgctc
ggtagtcgtaatgtcgattacttagtgccaaaccgttttgaagatggttatggtctgagc
cctgaagtggttgatcaagcgattgagcgtggcgcagagatgatcatgaccgtggataac
ggcgtttcatcactggaaggggtgcgttacgccaaacagaaagggctgcaagtggtggtc
accgatcatcacttaccgggacaagaactccctgaagtcgatgccatggtaaacccgaac
ttgcagcagtgtgcttttccttctaaggcgctggctggggtgggggttgctttctatttg
atgatggcactttgtgtgcacatgcgtcagcaaggttggtttgccgcgcaaggcatggtt
gaaccgaaattgatggaactgatcgatttagtggcactcggtacggtcgccgatgtggtg
ccactggatgacaacaatcgtattttggtgcaccaaggtttgcagcgtattcgtgcgggt
ttagcgcgccccggtattcaagctctgattgaagtcgccaaacgggatgcgcgccgtttg
gtcgctgctgattttggctttgcgcttggaccacggattaacgccgcagggcgtttggat
gatatgtcgttcggcgttgaacttttgctgtgtaacaacattcacgctgcgcggcgtatg
gcgagtgagctggacggcctcaatcaaacccgaaaagagattgaagaggggatgaagcaa
gaggcggtcgcgttttgtgagcgtttgcaactgagcgatgatcgcgagctgccttacggt
ttagtgctgtttcagcgcgattggcaccaaggggtgatcggcattcttgcttcgcgcatc
aaagagaaataccaccgacccgtgattgcgtttgctgaaggtggtgatggcaagctaaaa
ggttcatgtcgctcggttcccggtctgcatatgcgtgatgcactagataaaattgatacg
caaaacccgggcatcatactcaaatttggtggtcacgcgatggcggctggattaaccatt
gaagagcaaaattttgaacgtttttgccgactgtttgaccagctagtgcgtgaagagctg
gatgaagcagcactcaaaggcatcatcctcagcgatggcgaactgaaaccggaagagttt
tcgctgcataccgccgaattactgcgtgctggtggcccgtgggggcaagcgtttcctgaa
cccctgtttgatggcgaatttaaagtgctgcaccaaaaactggtcggcgaaaaacacctc
aaactgatgcttgagccgctatataaaggctttccaaccaatgtgatgatcgacggaatt
gcgtttaatgtcgacctacgtcgctggccggatgcctcagtcaaaacggtacgtttggcg
tacaaactcgacatcaacgagtttcgcggtaatcaatcattgcaactcatgattgatcat
ctggaagcgaaatga
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