Vibrio cholerae O1 MJ-1236: VCD_002023
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Entry
VCD_002023 CDS
T00903
Name
(GenBank) exodeoxyribonuclease V gamma chain
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
vcj
Vibrio cholerae O1 MJ-1236
Pathway
vcj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vcj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
VCD_002023
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vcj03400
]
VCD_002023
Enzymes [BR:
vcj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
VCD_002023
DNA repair and recombination proteins [BR:
vcj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
VCD_002023
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
UvrD_C
Motif
Other DBs
NCBI-ProteinID:
ACQ60192
LinkDB
All DBs
Position
1:1118697..1122143
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AA seq
1148 aa
AA seq
DB search
MFTVYHSNQVETLKILLVHLIKNEPLDDPFIPESILVQSPGMSQWLKMALASELGVAANL
EFPLPATFIWQMFTQVLPDVPQRSAFNKEAMSWRLMELLPKLLDRTEFQPLQRYLQDDED
DSKRFQLAEKIADIFDGYLVYRPDWILSWEAGEDVVEIADQHPWQPILWRELYAYTHKQG
HSIYHRANLYQRFIEQLASGDFDRSTWPKRLFIFGISALPPRYIDALRAMGEHIDVHLML
TNPCQHYWGDIRDRKYLARVAAQKRKILQINGEQVTIGSEVSPLKGDVENYLQESMHLSH
AVGNSLLASMGKMGRDNLYLLAQNDQSELELFIEIQRDSLLHHIQADILHLQEHQDDAKF
ASSGHKPSIAAQDDSLQIALCHSPIREVEVLHDRLLAEFERDPSLKPRDVIVMVPDINAY
APYIQAVFGNAPGERFIPFSISDRSADQESPILTAFLQLLALPQSRCLASELLELLETPA
IMARFAIDEEEFATAKRWVEEAGIRWGLNSDTGAEFELPASEQNTWQFGIERMLLGYAMP
AEAGLYELGGQWLAPYNQVQGMSAELAGKLAHFVQTLSELRSQLAQTQSMEQWRYWLNEL
LERCFSVDLQGELALKTIRDSLVNLKQQLADAGYQQAVSPAIIRQVLTNKLSGTRISQRF
LAGQVNFCTLMPMRSIPFRRVCLLGMNDGVYPPNEMVEGFDLRNVQRRVGDRSRREESRY
LFLEALLSAKEQLYISYVGRSIQDNSERVPSVLVSELLEYCEQNYCLAGDENLESDDSGR
RLVEHLTTQYPMVPFSPQAFIAGSFAREWLPAARRQGQSSADFLTPLSDYLLEVSWPMEL
DLVELQRFWRLPVEYFFKRRLKVSFEPPLAVLEDDEPFALDGLSAYQLRDELVENLLACR
DGAERDQVVAQFAKQQRAQGKLPVAAFGDLELAQSAQQALALAEKIGFLCHQPLEDEEID
LRLQPFDDGREVLLRGWLVKRYQSGLVRARSGAIRSEDLLAAWIDHLCLAASGKAVTTHL
IGYERKEGVQHQMLPPLNDAQQAKTLLSELVALFCQGMNQPLAYFPKTALACVEAGFSRG
KWQEDEEKSYKKMADTFNDSFYIKGEGGNRYIARIWPQWSDELAKTLRQLAIKVLQTPRL
QVQDAEQV
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
gtgtttacggtctaccactccaaccaagttgaaacgctgaagatcctgttggtgcattta
atcaaaaatgaaccgttggacgatccctttattcctgagagcattttggtgcaaagcccc
ggcatgtcgcagtggctgaaaatggcgctggccagtgaattaggggttgccgcgaatctt
gagtttcctctaccggcaacctttatctggcagatgtttactcaagtgttgcccgatgtg
ccgcagcgcagcgccttcaataaagaagccatgagttggcgtttgatggagctactgcct
aagctgcttgaccgcaccgaattccaaccgctgcaacgctatttacaagacgatgaagat
gattctaagcgcttccaattagcggaaaaaattgccgatatttttgatggttacttggtg
tatcgccccgattggattttaagttgggaagcaggggaagacgtggtggaaatcgctgac
caacacccgtggcagccgattttgtggcgtgaactctacgcttacacgcataagcaaggg
cactcgatttatcaccgtgccaacctctatcagcgttttattgagcagttggcgagtggc
gactttgatcgcagcacatggcctaagcgcttgttcatcttcggtatttctgcgctgccg
ccccgttatattgatgcgctgcgtgcgatgggggagcatatcgatgtgcacctgatgctg
accaacccttgtcagcactattggggcgacatccgtgaccgtaaatatctggcgcgagtg
gcagcgcaaaaacgcaaaatcctgcaaattaatggtgagcaagtcaccatcggcagtgaa
gtctcgccgctcaaaggcgatgtggaaaactatctgcaagagtcgatgcacctgagtcac
gcggtgggcaatagcttactggcttcgatgggcaaaatggggcgcgataatctctatctt
cttgcacaaaacgatcagtctgaattagagctgtttattgagattcaacgcgactcgctg
ctgcatcacatccaagcagatattttgcatctgcaagagcatcaagacgatgccaagttt
gccagcagcggtcataaacccagcattgccgcgcaggatgattccctgcagattgcccta
tgtcacagcccaattcgtgaagtagaagtgctgcacgaccgactgctggccgagtttgag
cgtgaccctagcctaaaaccgcgcgatgtaattgtgatggtgccagacattaacgcctac
gcgccttacattcaggcggtgtttggcaatgcgcccggcgagcgttttattccgttttca
atttccgatcgcagcgccgatcaagaaagcccgattttaaccgccttcttgcaactgctc
gcgctgccgcaatcacgctgtctggcttctgaactgcttgagctacttgaaaccccggcg
attatggcgcgttttgcgattgacgaagaagagtttgccactgccaaacgttgggtcgaa
gaagcgggcattcgttgggggctgaatagtgacactggcgcagagtttgaattgcccgcc
agtgaacaaaatacgtggcagtttggcattgaacgtatgttactgggttacgccatgccg
gctgaagcggggttgtatgaacttggcggccagtggcttgccccctataaccaagtgcaa
ggcatgagcgccgagttggcgggtaagctagcacactttgtgcaaacgctcagcgagctg
cgtagccaactggcgcaaactcaaagcatggagcagtggcgttattggctcaacgagctg
ctagagcgctgttttagtgtcgatctgcaaggtgagctggcgctgaaaaccatccgcgat
agtttggtgaacctaaaacagcagttggccgacgcgggctaccaacaagcggtttcaccg
gccatcattcgccaagtgctgaccaataaactctccggcacgcggattagccaacgcttt
ttagcgggacaagtgaacttctgtaccctgatgccgatgcgttcgatcccgtttcgccga
gtttgcctgcttggcatgaatgatggtgtttatccacccaatgaaatggtggaagggttt
gacctgcgcaatgtgcagcgccgagtcggcgaccgttcacggcgtgaagagtcgcgctac
ctgttcctcgaagccttgttgtcagccaaagagcagctgtatatcagctatgtcggccgc
tcgattcaagataacagcgaacgcgtgccttcagtgctggtcagtgagcttttggaatat
tgcgagcagaactactgcttggctggcgatgaaaatctagaaagtgatgactccggacgt
cgcttggttgagcacttaaccacccagtatcctatggtgccgttcagcccgcaggcgttt
atcgctggcagttttgcccgtgaatggctacctgccgcgcgccgccaagggcagagtagc
gccgattttctcacgccactcagtgattatctgctcgaagtgagttggccgatggagctg
gatctggtcgagctgcaacgtttttggcgtctgccggtggagtatttcttcaaacgccgc
ttgaaagtgagctttgagccgccgctggccgtgctggaagacgatgagccgtttgctttg
gatggattgagcgcgtatcagctgcgtgatgagttggtggaaaatctgctcgcttgccgt
gatggcgcagagcgcgaccaagtggtggcgcagtttgctaagcagcaacgagcgcaaggc
aagttgcctgtggcagcgtttggcgatcttgaattggcgcaaagtgcgcagcaagctttg
gcgctggcggaaaaaattggctttttgtgtcaccaaccactggaagatgaagagattgat
ctacgcttacagccctttgacgatggccgagaagtcttactacgtggttggctcgtgaag
cgttatcaatctggcttggtgcgcgcacgcagtggcgcgattcgctcggaagatttatta
gccgcatggattgatcatctctgcttggcggcgagcggcaaagccgtcacgacccatttg
attggttatgagcgcaaagaaggagtgcagcaccaaatgctgccgccacttaatgacgcg
cagcaagccaagacgctactgagtgaactggtggcgctgttttgccaaggcatgaaccag
cctttggcttatttcccgaaaacggcgttggcttgcgttgaggccggattttcccgtggc
aaatggcaggaagatgaagagaagtcctacaagaaaatggcggacaccttcaacgatagc
ttttacatcaagggtgaaggcggtaatcgctacatcgcgcgtatttggccgcagtggagt
gatgaactggcaaaaacgctgcgccaattggccatcaaagtgctgcaaacaccgcgttta
caagtgcaagatgccgaacaggtttaa
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