Vibrio cholerae O1 MJ-1236: VCD_002337
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Entry
VCD_002337 CDS
T00903
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
vcj
Vibrio cholerae O1 MJ-1236
Pathway
vcj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VCD_002337
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcj03019
]
VCD_002337
03009 Ribosome biogenesis [BR:
vcj03009
]
VCD_002337
Enzymes [BR:
vcj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
VCD_002337
Messenger RNA biogenesis [BR:
vcj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
VCD_002337
Ribosome biogenesis [BR:
vcj03009
]
Prokaryotic type
rRNA processing factors
VCD_002337
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
KH_1
Motif
Other DBs
NCBI-ProteinID:
ACQ60504
LinkDB
All DBs
Position
1:complement(1443176..1446334)
Genome browser
AA seq
1052 aa
AA seq
DB search
MKRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLELPQGMGLIVRTAGVGKSAEEL
EWDLNVLLKHWSAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNSIYERA
LEHIRLVRPDFVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RLREAVRVDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLAL
SVLRLIEEEALKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETP
HFEVIRVREGEEQDVLSYLIPKKLEAMKEAEGKEVVDVELKPKRIEEPVLKGFAAPAEAV
PAPTPKPKAEPQPVAEVQQPAQPGFFSRVFKAIASLFSATPEAAKVEAPVTQNSEQDKPR
RERNDRNNDRRRNPRDKNRRRGNEENNERNDKETSNSNRKPQERKPKQERGERNERNDRN
ERPETERPERQDRRNKRDESKTAKLLEQGRQLAAEAQQEVKAVEPKEEKAAVVKERRQRR
KLSKQIRVKDQLAAEELDNLSTAPVDNAFDAPAPVNLPVTDDFADSAQEDNEQDDQKQRR
NRRSPRHLRASGQRRRRGRDRRPNPFRLRKGGVASPEMAMGKVMPRYDLAPRPQSRHETA
EGAQHVTHVTPTAATAVVESEKVAAPRVLGGVAFPEMAMGKVIVRRETAAVQPEPVVQEP
VITDVIAETLIAPVEPVVVEATVIEAPVIEESATETAALETVVAKVAEVEEPATISDEVV
AQTTVEVIADKMAEPIKVVKPVTVSATSLTAKAVIQQPYASSPMTKAPGSDDIREVQVNA
APLRAERYQARGAGSQVARNQASAGMSKPQSF
NT seq
3159 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaacgcaactcaaaaagaagagttgcgtgtcgcgttggtcgat
ggccaacgtctgttcgatctggatattgaaagtccggggcacgaatcgaaaaaagcaaat
atctacaaaggccgcattacccgcattgaacccagtcttgaagctgcattcgttgactac
ggtgctgaaagacacggtttcctccctctcaaagaaatcgctcgtgaatacttccctgat
ggttatagctaccaaggtcgtccaaacatcaaagatgtgctgaacgaaggtcaggaagtg
atcgtgcaaatcgagaaagaggagcgcggtagcaaaggtgcagccctaaccacctttatc
tctctagcgggcagctacttagttctgatgccaaataaccctcgtgctggcggtatttct
cgtcgtatcgaaggcgatgagcgcactgaactgaaatcagcactcagctcactagaattg
ccacaaggtatgggcttaattgttcgtaccgcaggcgtaggtaaaagcgctgaagagcta
gagtgggacttaaatgtactgcttaagcactggagtgcgattaaacaagcgtctgattca
aaccctgcacctttccttatccaccaagaaagtaacgtgattgttcgtgcgatccgtgat
tacttgcgtcgtgatattggtgaaattcttatcgacagcaacagcatttacgagcgtgct
cttgagcatatccgtttagtgcgcccagatttcgtcaatcgtgtgaaaaaatacgaaggc
gaagtaccgctgttcagccatttccaaatcgaaagccagattgaatcggctttccaacgt
gaagttcgcctgccttctggtggttcaatcgttattgacccaaccgaagccttgacttcc
atcgacatcaactctgctcgcgcaaccaaaggtggcgatattgaagagaccgctctcaat
accaacctagaagctgcagatgaaatcgcacgccaattgcgtctgcgtgacctcggtggt
cttgtggtgatcgacttcatcgatatgacccctgttcgccaccagcgtgaagtggaaaac
cgtctacgtgaagcggtgcgtgttgaccgtgctcgcgttcaaattggccgtatttctcgc
tttggtttgctggagatgtcgcgtcaacgtttgagcccttctctggcagaagcaagccat
cacatctgtcctcgttgtaaaggaaccggcgtgattcgtgacaacgaatctttggcactt
tctgttctgcgcttaattgaagaagaagcactcaaagacaacacatcgcaagtgcttgcg
gtggtacctgtctctatcgcgtcttatctgttaaacgagaagcgtcgctcaatcaatcac
attgaaaaagcgcagcaagttcgcattactatcgtgccaaattccgatatggaaacaccg
cactttgaagtgatccgcgtgcgtgaaggtgaagagcaagatgttctctcttacctgatt
ccgaaaaagctggaagcgatgaaagaagcggaaggcaaagaagtggtcgatgttgagctc
aaaccaaaacgtattgaagagccagtactgaaaggttttgcagcgcctgcggaagcggtt
cctgctccaacaccaaaacctaaagcagaacctcaacctgttgcagaggtacagcaacct
gcgcagcctggtttctttagccgtgtgtttaaagcgattgcgagcctattctctgcgaca
ccggaagcggccaaagtagaagcgcctgtaacgcagaatagtgaacaagacaaacctcgt
cgtgaacgtaacgatcgtaataatgatcgtcgtcgtaaccctcgtgacaaaaaccgtcgc
cgcggtaatgaggaaaacaacgagcgtaacgataaagagacatcaaacagcaaccgtaag
ccacaagagcgcaagccaaagcaagagcgtggtgagcgtaacgaacgtaatgaccgcaat
gaacgtccagaaaccgagcgtccagaacgtcaagatcgtcgtaataaacgagatgaaagt
aaaacggctaaattgcttgagcaaggtcgccaattagcggctgaagcacaacaagaagtt
aaagccgttgagcctaaagaagagaaagccgcggttgttaaagaacgtcgtcaacgtcgt
aagctctcgaagcaaattcgagtcaaagatcagcttgccgcagaagagttagacaacctg
tctacagctcctgttgacaatgcgttcgacgctccagcgccagttaatctgcctgtaacc
gatgattttgcggattcggctcaagaggataacgagcaagatgatcagaagcagcgtcgt
aatcgccgctcgccacgtcatctgcgcgccagcggccagcgccgccgtcgtggtcgtgat
cgtcgccctaacccattccgcctgcgtaaaggtggggttgcctctcctgagatggccatg
ggtaaagtgatgcctcgctacgacttagcgccgcgtccacagtcacgccatgaaactgct
gaaggtgctcaacatgtgactcatgtaacaccgactgcggcaactgcagtagtagaaagc
gaaaaagtggcagcgccacgtgtactcggaggcgttgccttcccagaaatggcgatgggt
aaagtcatcgtacgtcgtgaaactgctgcggttcaacctgagccagtagtgcaagagcca
gtgattactgacgtgatcgcagagacactcatcgcacccgttgagccggtcgtggttgaa
gctacagtgattgaagctccggtaattgaagagtcagcaacagaaactgctgcgctagaa
accgtagtggcgaaagtcgctgaagtcgaagagccagccacaatcagtgacgaggttgtc
gcacaaacgacggttgaagtgatcgcagacaaaatggcagaaccaattaaggttgttaag
ccagtgacagtgagtgcaacatcactcaccgcgaaagcggtcatccaacagccgtacgcc
tcatcgccgatgactaaagcacctggctcagatgacatccgtgaagtgcaggttaacgcc
gcgcctttacgtgctgaacgttaccaagcgcgtggtgcgggtagtcaagtcgcgcgtaat
caagccagtgcgggcatgagcaagccgcaaagcttctaa
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