Vibrio cholerae O1 MJ-1236: VCD_002475
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Entry
VCD_002475 CDS
T00903
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vcj
Vibrio cholerae O1 MJ-1236
Pathway
vcj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vcj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VCD_002475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vcj03400
]
VCD_002475
Enzymes [BR:
vcj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VCD_002475
DNA repair and recombination proteins [BR:
vcj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
VCD_002475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Glyco_tran_WecG
UB2H
ERCC3_RAD25_C
AAA_30
RecG_dom3_C
SecA_DEAD
T1R_D3-like
Motif
Other DBs
NCBI-ProteinID:
ACQ60641
LinkDB
All DBs
Position
1:complement(1593870..1597343)
Genome browser
AA seq
1157 aa
AA seq
DB search
MTMTTHSLLSLFSAQGAGDKKAIGNLHGASLALAIAELANAHTSHTLLAVPDPQTALKLL
HEVEQFSHSEVALFPDWETLPYDNFSPHQDIISDRISRLYQLPSLTRGITIVPVSTLLQR
QSPRDFLLQHTLIVKRGDHFSLDKLRLQLENSSYRHVDQVFGPGEYASRGSILDLFPMGS
SDPFRIDFFDDEIDTIRTFDPDNQRSIAEMDEIRLLPAHEFPTTAAAIEEFRNRWRQRFE
ARREPESVYSQVSKGTWPAGIEYWQPLFFEHSETLFDYLPANSQLLVVGELEKAIDQFLT
DVDYRYDQRNIDPLRPLLPPNELWLRKDELFAHFKTLPQVQLTSSPIELRAGRMNAQVQP
LPVLAVEHQNKEPLAALRQFSEQFTGKIIFSVESEGRREALLELLQRIKLRPQSQNDFSL
ACQQTEKYSLVLGSAERGFIYGDNQVALICESDLLGDRVIQRRRKKDRKNVTNSDAVIRN
LAELKPGQPVVHIDHGIGRYLGLQTLEAGGMVSEYVMLEYQNEAKLYVPVSSLNLISRYS
GGAEEAAQLHKLGGEAWVKARRKAAEKVRDVAAELLDVYAKREIKPGFKFHLDREQYATF
KATFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVA
VLVPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKL
LSSEIRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDL
SIIATPPARRLAIKTFVRQSEDSVIREAVLREIMRGGQVYFLHNQVETIDKVAADLEKLV
PEARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGL
AQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIR
GAGELLGEEQSGQIQSVGFTLYMEMLEQAVEALKSGKEPALDDLLREQTEVEMRLPALLP
EEYIPDINTRLSMYKQIASVASKDELAELKVELIDRFGKLPDAALNLLAIAELKLNAMRL
KVRKIEAHERGGYVEFYPNADINPVFLVKLLQSQPKLLAMDGPTKLKFTLPLVERSARIQ
FVADMLKNFQQNVLPAR
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
gtgactatgactacacactctttactctctctgttttcggcgcaaggtgccggagacaaa
aaagccatcggtaatttacacggcgcaagtttagcgctggccattgcggaactcgccaat
gctcatacgagccatacgttgctcgccgtgcccgatccacaaaccgcgctcaaattgcta
cacgaagtggaacagtttagccacagcgaagtggcgctcttccccgattgggaaacgctg
ccctacgataatttttcaccccatcaggacatcatttctgatcgtatttcgcgtttgtat
cagctcccaagcttaacgcgcggtatcacgattgtcccggtcagtaccttgcttcagcgc
cagtcaccacgtgactttttgttgcagcacaccttaattgttaaacgtggcgatcacttt
tcactggataaactgcgcttgcagttagaaaacagcagctatcgccatgtcgatcaggtc
tttggccccggtgaatacgccagtcgcgggtcgattcttgatctcttccctatgggcagt
agcgacccattccggatcgatttctttgatgatgaaatcgacaccattcgcacctttgat
ccagacaatcagcgctcaatcgctgaaatggatgaaattcgcctgctgcccgcccatgag
tttccgacgacggccgcggcgatcgaagagtttcgtaaccgctggcgacagcgttttgaa
gcgcgccgcgagccggaatcggtttacagccaagtctctaaaggcacttggccggcaggg
attgagtattggcagccactcttttttgagcacagcgagactctgtttgattacctgccc
gccaacagccagcttttggtggttggcgagctggaaaaagccatcgaccagttcttaact
gatgtcgattaccgctacgaccaacgcaatatcgacccactgcgcccactgctgccgccc
aatgagttgtggctgcgtaaagatgagctgtttgcccactttaaaactctgccgcaagtc
caactgacaagctcacctatcgagctgcgtgccggtcgaatgaatgcgcaagttcaacca
ctacccgtattggccgttgaacatcaaaacaaagagcctttggcggcactgcgccaattt
agcgaacaatttaccggcaaaatcattttctcagtcgagtcggaaggtcgccgtgaagcg
ctactggagttgttacagcgcattaaactgcgcccgcaaagccaaaatgatttcagcctt
gcgtgccaacaaacggaaaaatactcactggtgctcggctcagcagagcgcggatttatc
tatggtgataatcaagttgccttgatttgtgagagcgatttactgggcgatcgggtgatt
caacgtcgccgcaaaaaagatcgcaaaaacgtcaccaacagtgatgcggtaatccgcaac
cttgccgagctcaaaccggggcaacccgttgtccatattgatcacgggatcggacgttac
ttaggcttacaaacccttgaagcgggtggcatggtcagcgaatacgtgatgctggagtac
caaaacgaagccaagctgtatgtgccggtttcgtcactgaacctgatcagccgctactcc
ggtggcgcagaagaagccgcccaattgcataaattagggggtgaagcgtgggtcaaagcg
cgccgcaaagcggcggaaaaagtgcgcgatgtcgcggcagaacttttggatgtgtatgcc
aagcgtgaaatcaaaccgggctttaaatttcatctcgaccgtgaacaatacgcgaccttc
aaagccaccttcccgtttgaagaaaccgatgaccaagcaatggcgatcaacgccgtgcta
tccgacatgtgtcaagccaaagccatggatcgtttggtgtgtggtgacgtcggctttgga
aaaacagaagtagcgatgcgcgccgcgtttgtcgcgaccgataacggcaagcaagtcgcc
gtattagttccaactacgctgctcgcccagcagcattttgaaaacttccgcgaccgcttt
gctaacttgccgatccgcgtcgaagtgctctcccgctttaaatcagccaaagagcaaaaa
caaatcctacaagacgtagcggacggcaaagtcgacattctggtcggtacccataagttg
ctctctagcgaaattcgttttgcggatcttggcttgctgattgttgacgaagaacaccgt
ttcggagtgcgccaaaaagaaaaagtcaaagcgatgcgtgccgatgtggatattctgact
ctcactgccacgccaatcccacgtacactcaacatggccatgagtggtatgcgtgacctg
tcgattattgccacacctccagcgcgccgtttagccatcaaaacctttgttcgtcaaagt
gaagatagtgtgatccgtgaagcggtactgcgtgaaattatgcgcggtggtcaggtgtac
tttctgcataatcaggttgaaaccatcgataaagtggccgcagatttagaaaaactggtg
cctgaagcgcggattaccgtcgctcacgggcagatgcgtgaacgtgagctggaaaaagtg
atgaacgatttctaccaccagcgtttcaatttgctggtgtgtaccacgatcatcgaaacc
ggtatcgacgttccgaccgcgaataccatcatcatggatcgcgctgacagcttaggttta
gcccagttgcaccagttacgtggccgcgtcggtcgttcgcatcaccaagcctatgcttac
ctgttaacgccaccgcctaaagcgattaccaaagatgcggtcaaacgcctagaggcgatt
gcctctttagaagatttgggggccggctttactctcgccacgcacgacctagaaattcgc
ggggccggtgaattgttaggcgaagagcaaagtggccagattcagtcggtcggttttact
ctgtatatggaaatgctcgaacaagcggtcgaagccctaaaatcaggcaaagaacctgcg
ctggatgatttactgcgtgagcagaccgaagtcgaaatgcgcctaccagccttgctgccg
gaagagtacatccccgatatcaatacgcggttatccatgtacaaacagatcgccagcgta
gcgagtaaagacgaattggctgaactcaaagtcgaattgattgatcgctttggtaaatta
ccagacgccgcgttaaacttactcgccattgctgaactgaaactcaatgctatgcgccta
aaagtgcgtaaaattgaggcgcatgagcgtggcggatacgtagagttctatcccaatgct
gacattaacccggtgtttttggttaaactgctgcaatcgcaaccaaagttactggcgatg
gatgggccaaccaaattgaaatttaccttgcctttggttgaacgcagtgcgcgcattcaa
tttgtcgctgacatgttgaagaatttccagcaaaatgtactacctgctcggtaa
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